Gene: AT2G20180
     


Gene description


TAIR ID: AT2G20180

Short description: phytochrome interacting factor 3-like 5

Pathogen responsiveness: -0.52

General responsiveness: 0.27

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G165042  

Wheat:

TAAFFX.82873.1.S1_AT  


GO biological process


transcription, DNA-templated, regulation of transcription, red light signaling pathway, negative regulation of photomorphogenesis, regulation of seed germination, gibberellic acid mediated signaling pathway, negative regulation of seed germination, chlorophyll biosynthetic process, regulation of photomorphogenesis, negative gravitropism, heme biosynthetic process


GO cellular component


nucleus


GO molecular function


transcription factor activity, sequence-specific DNA binding, protein binding, identical protein binding


Protein domain


PfamPF00010, Helix-loop-helix DNA-binding domain
SMARTSM00353, HLH

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790, AT2G20180

Target:
AT3G11420, AT1G64710, AT5G65210, AT1G06400, AT5G01960, AT5G14170, AT1G80420, AT1G71530, AT1G77450, AT1G66890, AT4G27260, AT4G35070, AT1G14910, AT1G21000, AT1G03980, AT1G03790, AT1G03800, AT1G01840, AT5G13740, AT5G42250, AT1G19460, AT5G24930, AT3G09010, AT4G23620, AT5G42242, AT1G69000, AT5G02590, AT3G63010, AT5G09620, AT1G80580, AT2G18780, AT5G65430, AT1G01560, AT3G03180, AT1G19490, AT5G65158, AT4G24110, AT5G58620, AT5G54950, AT2G42280, AT1G72460, AT5G22950, AT5G10745, AT4G27440, AT1G80620, AT2G31010, AT1G75440, AT1G70800, AT4G18710, AT3G16010, AT1G68660, AT1G01580, AT1G77480, AT1G72450, AT2G42360, AT1G22830, AT5G60680, AT5G59790, AT5G03690, AT1G60180, AT3G16830, AT3G10020, AT4G29090, AT5G35660, AT1G73660, AT2G19460, AT2G44900, AT2G45610, AT3G13000, AT1G73130, AT1G03220, AT1G16860, AT4G14680, AT2G34930, AT4G25480, AT4G26080, AT1G15120, AT2G01140, AT1G04150, AT2G45620, AT1G70300, AT3G24420, AT4G37460, AT4G27450, AT3G22380, AT2G42975, AT1G61400, AT3G52500, AT4G27310, AT1G56590, AT4G39403, AT4G27980, AT3G16490, AT3G62650, AT1G66600, AT4G25490, AT3G07260, AT1G03430, AT1G20620, AT5G59830, AT5G59220, AT5G09640, AT4G24160, AT5G58660, AT3G56340, AT1G14920, AT4G18650, AT5G39080, AT1G73120, AT3G24050, AT1G75790, AT2G42970, AT2G30780, AT4G36770, AT3G24650, AT2G45430, AT2G40600, AT1G09520, AT3G21100, AT3G59150, AT4G21690, AT4G15236, AT3G02570, AT5G11740, AT2G46270, AT5G05970, AT1G05670, AT1G74920, AT1G62420, AT5G10740, AT5G08330, AT2G27505, AT1G27960, AT5G62650, AT1G17940, AT5G25460, AT1G02340, AT2G44920, AT2G46420, AT2G18790, AT2G23430, AT5G56260, AT4G39800, AT3G08020, AT1G80530, AT1G17830, AT4G37000, AT2G01850, AT1G68990, AT1G06410, AT1G52920, AT3G24210, AT2G46410, AT1G01830, AT1G79470, AT2G23440, AT5G39070, AT2G37760, AT5G14550, AT1G73670, AT3G02050, AT1G15790, AT2G23460, AT5G59820, AT3G23910, AT1G52890, AT3G11540, AT3G56360, AT5G03710, AT1G03780, AT5G62220, AT2G43060, AT5G54470, AT2G42760, AT2G25690, AT1G26270, AT3G10410, AT2G31980, AT1G67090, AT1G66350, AT2G42955, AT5G23850, AT3G15210, AT1G20100, AT2G37750, AT3G23030, AT2G19806, AT1G09270, AT5G54960, AT4G36670, AT5G23930, AT5G54380, AT1G07170, AT2G45670, AT1G80290, AT1G72770, AT1G69720, AT4G27950, AT1G62580, AT1G01480, AT5G51330, AT1G73110, AT2G21510, AT1G32920, AT5G58650, AT2G36410, AT1G15680, AT2G45950, AT4G25380, AT3G60150, AT1G71490, AT1G03990, AT3G24503, AT1G73885, AT5G65300, AT1G69010, AT1G70140, AT2G30990, AT3G27590, AT2G38470, AT3G59760, AT3G14205, AT1G70290, AT1G30110, AT4G37470, AT5G64750, AT3G61185, AT4G26000, AT2G42610, AT4G36370, AT4G37540, AT1G70420, AT2G22830, AT3G47650, AT3G54000, AT3G44320, AT3G02580, AT5G62410, AT1G64080, AT1G75450, AT3G08030, AT5G49700, AT1G71520, AT1G74930, AT5G06390, AT1G51520, AT3G30775, AT4G16370, AT4G28240, AT2G36240, AT2G32970, AT1G80440, AT1G64090, AT3G44310, AT5G66580, AT1G49490, AT1G01720, AT5G57990, AT1G80490, AT5G39240, AT3G50790, AT1G22810, AT5G67030, AT2G28390, AT5G65690, AT5G08130, AT4G02950, AT2G32670, AT5G10510, AT3G21550, AT5G02020, AT2G29080, AT5G08139, AT1G62290, AT1G04130, AT3G14230, AT5G05170, AT1G28335, AT3G62640, AT4G11040, AT2G14210, AT4G36040, AT2G44910, AT5G62670, AT2G36270, AT5G03700, AT5G35670, AT2G18876, AT3G48360, AT3G47630, AT1G16740, AT1G02410, AT2G44660, AT3G46970, AT1G25310, AT3G15240, AT1G50420, AT1G62370, AT3G29575, AT5G10550, AT4G18630, AT5G49690, AT5G65290, AT5G05180, AT3G16000, AT3G27580, AT5G53290, AT2G19800, AT3G62090, AT5G51560, AT5G08270, AT3G57520, AT1G32710, AT2G20520, AT1G69840, AT4G37010, AT4G14690, AT1G27990, AT3G46660, AT3G61830, AT5G65390, AT3G28345, AT4G22190, AT5G67190, AT1G30020, AT3G61640, AT1G76090, AT4G22010, AT3G12120, AT1G31230, AT4G00720, AT2G21520, AT5G67411, AT1G03600, AT1G72820, AT5G14650, AT2G26720, AT5G03370, AT3G55560, AT1G01310, AT3G19580, AT5G20960, AT1G15750, AT2G47000, AT5G54190, AT1G19190, AT5G05965, AT1G78380, AT1G03850, AT3G03150, AT5G09970, AT4G31390, AT1G75360, AT3G11570, AT5G67290, AT5G10750, AT5G54510, AT1G16840, AT1G22190, AT1G67100, AT5G63530, AT2G42870, AT5G51550, AT4G17450, AT1G12440, AT1G01470, AT5G57120, AT2G42430, AT3G21540, AT5G20030, AT1G22400, AT3G21560, AT4G11150, AT3G12300, AT1G15810, AT1G07150, AT5G08230, AT5G10030, AT3G63003, AT3G55980, AT2G45960, AT5G54480, AT5G42750, AT1G78610, AT1G79150, AT5G49710, AT5G39060, AT5G06980, AT1G20990, AT2G47260, AT2G27060, AT5G07440, AT2G47180, AT2G29090, AT3G10420, AT1G67590, AT3G16150, AT5G66880, AT3G12920, AT2G21170, AT3G13310, AT5G63790, AT4G36780, AT5G54970, AT3G47640, AT1G16730, AT5G20190, AT1G28360, AT3G61160, AT5G60670, AT1G75810, AT4G10010, AT3G62630, AT1G13245, AT2G42770, AT5G24470, AT3G47940, AT1G25320, AT2G32160, AT3G47430, AT3G47950, AT1G80340, AT1G78700, AT3G60400, AT3G50800, AT5G13760, AT2G38465, AT3G10405, AT5G51340, AT5G67360, AT1G04120, AT3G54810, AT1G53180, AT1G69030, AT5G65590, AT5G65660, AT2G44650, AT4G00310, AT1G71930, AT3G61680, AT4G01120, AT5G67480, AT3G45060, AT2G46225, AT5G02540, AT2G42780, AT1G04360, AT1G64620, AT5G02200, AT5G39090, AT5G05430, AT5G65400, AT4G35850, AT5G13730, AT1G21590, AT3G50730, AT3G01470, AT4G22000, AT1G09260, AT4G39920, AT1G24260, AT2G38210, AT3G63006, AT3G15200, AT1G70790, AT1G20900, AT1G20970, AT5G06990, AT3G17830, AT4G01130, AT5G67070, AT4G27970, AT5G14640, AT2G25470, AT1G03590, AT4G23110, AT5G44220, AT1G25540, AT3G10415, AT3G02550, AT4G25390, AT5G28300, AT3G24220, AT2G45910, AT2G31580, AT4G37550, AT1G33060, AT4G36880, AT1G70150, AT4G37870, AT1G01550, AT1G17840, AT1G05690, AT2G40610, AT4G36790, AT5G27320, AT1G15550, AT3G53720, AT4G37880, AT3G60690, AT5G65380, AT2G37740, AT1G03810, AT1G25550, AT1G73900, AT1G09570, AT1G24265, AT2G20515, AT1G56600, AT3G58620, AT2G25460, AT4G03010, AT1G68670, AT3G56350, AT1G15670, AT5G63800, AT5G05600, AT4G25260, AT2G34940, AT1G12420, AT1G01260, AT4G34540, AT1G49500, AT1G73687, AT3G05120, AT1G27980, AT1G23710, AT2G20180, AT5G07020, AT4G39850, AT1G73480, AT1G03982, AT3G16140, AT2G32660, AT2G21180, AT2G45580, AT5G02530, AT1G73690, AT2G44670, AT4G23635, AT1G71070, AT1G16850, AT4G31540, AT4G38430, AT5G59810, AT3G13320, AT1G04160, AT5G64260, AT3G12320, AT1G11720, AT5G20170, AT5G02580, AT5G66740, AT4G34530, AT1G08560, AT1G26770, AT4G03390, AT4G36660, AT5G14570, AT1G33240, AT2G01570, AT3G03170, AT5G05590, AT2G24570, AT5G60860, AT4G36000, AT2G46970, AT1G79160, AT1G30040, AT5G62000, AT3G02540, AT1G08570, AT3G57870, AT5G65900, AT3G61430, AT4G33800, AT1G20960, AT4G01250, AT2G43500, AT1G49780, AT2G27500, AT4G17460, AT4G28230, AT1G01250, AT2G47010, AT3G63350, AT4G23060, AT2G42340, AT5G47060, AT2G45590, AT1G51510, AT1G74940, AT2G36030, AT1G09245, AT4G32300, AT1G14720, AT3G61420, AT5G67060, AT5G07010, AT1G08100, AT1G76080, AT1G15125, AT3G61182, AT1G60190, AT5G54980, AT2G36380, AT1G79170, AT3G50240, AT1G56220, AT2G44080, AT5G14200, AT1G69890, AT1G20110, AT5G04590, AT1G73880, AT1G77490, AT3G17860, AT4G13520, AT4G23750, AT5G67500, AT3G24040, AT5G63520, AT2G42960, AT4G36010, AT4G24660, AT4G11820, AT1G23700, AT1G22770, AT1G19210, AT2G40220, AT1G75830, AT5G05250, AT5G03140, AT1G80600, AT1G68690, AT5G62390, AT5G20200, AT3G21720, AT4G23100, AT2G45820, AT4G16490, AT1G75480, AT1G13950, AT5G61590, AT5G65440, AT1G73540, AT4G36030, AT1G80280, AT1G22060, AT4G25500, AT5G06970, AT4G32020, AT1G79490, AT2G20530, AT1G03630, AT5G08335, AT4G32480, AT5G35657, AT2G36080, AT5G05440, AT1G71100, AT3G05110, AT5G23280, AT1G72810, AT2G41240, AT4G29790, AT1G78390, AT2G38220, AT1G72470, AT1G67785, AT3G13960, AT3G16820, AT3G14240, AT4G17500, AT4G27300, AT3G25870, AT5G64420, AT1G20050, AT4G27460, AT1G12450, AT5G23860, AT5G51460, AT1G14730, AT3G19590, AT2G16650, AT3G04730, AT5G14180, AT3G05880, AT2G05520, AT4G17230, AT2G20510, AT1G01730, AT1G03610, AT3G14360, AT4G01245, AT2G43490, AT1G19110, AT1G64700, AT2G42350, AT1G31240, AT5G67300, AT3G21090, AT1G76990, AT5G66640, AT1G19200, AT2G22840, AT1G04690, AT2G36020, AT4G38440, AT1G75490, AT1G27210, AT3G05640, AT5G58000, AT4G10020, AT4G03420, AT5G11530, AT4G31800, AT5G62660, AT1G08980, AT3G14050, AT5G01720, AT5G01950, AT4G37480, AT1G75340, AT5G66590, AT5G56270, AT4G11140, AT3G18080, AT3G02040, AT5G05240, AT5G65280, AT1G05680, AT1G78630, AT3G57020, AT1G71090, AT2G16660, AT1G74950, AT5G64550, AT3G29577, AT1G19180, AT5G02260, AT1G70560, AT3G59140, AT2G28420, AT1G76600, AT1G07430, AT3G15220, AT1G19450, AT5G02570, AT1G28330, AT2G31390, AT3G06500, AT3G47340, AT1G02350, AT3G50660, AT1G73530, AT2G45830, AT5G66730, AT5G58350, AT2G46710, AT4G11050, AT4G22590, AT1G01650, AT3G63340, AT2G01150, AT1G71080, AT4G19700, AT1G30440, AT5G58610, AT3G23920, AT5G58330, AT3G07250, AT5G13700, AT3G26510, AT5G59230, AT3G29370, AT4G08950, AT1G67310

Protein-protein interaction network


The number of partners (degree) is: 24 (Top10%)

click to view PPI network

Differentially expressed condition


16 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE11807Col, WT, water 4 hCol, WT, Flg22 4 h-2.065.90E-03
GSE17464Laer, controlLaer, Alternaria brassicicola 3 d1.896.24E-05
GSE17464Penta, controlPenta, Alternaria brassicicola 3 d1.963.17E-05
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-2.355.42E-09
GSE21920Col, WT, mockCol, WT, Pto HopZ1a 6 h-1.632.81E-06
GSE37269St0, WT, controlSt0, WT, TEV 21 d-2.361.15E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-2.336.04E-16
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-2.376.55E-16
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-1.983.66E-15
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.616.57E-14
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-1.847.98E-15
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.571.22E-10
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-2.095.55E-13
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-1.859.93E-05
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-1.791.12E-05
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h-1.571.02E-02






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