Gene: AT2G20180

Gene description

TAIR ID: AT2G20180

Short description: phytochrome interacting factor 3-like 5

Pathogen responsiveness: -0.52

General responsiveness: 0.27


Rice: No orthologous gene




GO biological process

transcription, DNA-templated, regulation of transcription, red light signaling pathway, negative regulation of photomorphogenesis, regulation of seed germination, gibberellic acid mediated signaling pathway, negative regulation of seed germination, chlorophyll biosynthetic process, regulation of photomorphogenesis, negative gravitropism, heme biosynthetic process

GO cellular component


GO molecular function

transcription factor activity, sequence-specific DNA binding, protein binding, identical protein binding

Protein domain

PfamPF00010, Helix-loop-helix DNA-binding domain

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

AT5G13790, AT2G20180

AT3G11420, AT1G64710, AT5G65210, AT1G06400, AT5G01960, AT5G14170, AT1G80420, AT1G71530, AT1G77450, AT1G66890, AT4G27260, AT4G35070, AT1G14910, AT1G21000, AT1G03980, AT1G03790, AT1G03800, AT1G01840, AT5G13740, AT5G42250, AT1G19460, AT5G24930, AT3G09010, AT4G23620, AT5G42242, AT1G69000, AT5G02590, AT3G63010, AT5G09620, AT1G80580, AT2G18780, AT5G65430, AT1G01560, AT3G03180, AT1G19490, AT5G65158, AT4G24110, AT5G58620, AT5G54950, AT2G42280, AT1G72460, AT5G22950, AT5G10745, AT4G27440, AT1G80620, AT2G31010, AT1G75440, AT1G70800, AT4G18710, AT3G16010, AT1G68660, AT1G01580, AT1G77480, AT1G72450, AT2G42360, AT1G22830, AT5G60680, AT5G59790, AT5G03690, AT1G60180, AT3G16830, AT3G10020, AT4G29090, AT5G35660, AT1G73660, AT2G19460, AT2G44900, AT2G45610, AT3G13000, AT1G73130, AT1G03220, AT1G16860, AT4G14680, AT2G34930, AT4G25480, AT4G26080, AT1G15120, AT2G01140, AT1G04150, AT2G45620, AT1G70300, AT3G24420, AT4G37460, AT4G27450, AT3G22380, AT2G42975, AT1G61400, AT3G52500, AT4G27310, AT1G56590, AT4G39403, AT4G27980, AT3G16490, AT3G62650, AT1G66600, AT4G25490, AT3G07260, AT1G03430, AT1G20620, AT5G59830, AT5G59220, AT5G09640, AT4G24160, AT5G58660, AT3G56340, AT1G14920, AT4G18650, AT5G39080, AT1G73120, AT3G24050, AT1G75790, AT2G42970, AT2G30780, AT4G36770, AT3G24650, AT2G45430, AT2G40600, AT1G09520, AT3G21100, AT3G59150, AT4G21690, AT4G15236, AT3G02570, AT5G11740, AT2G46270, AT5G05970, AT1G05670, AT1G74920, AT1G62420, AT5G10740, AT5G08330, AT2G27505, AT1G27960, AT5G62650, AT1G17940, AT5G25460, AT1G02340, AT2G44920, AT2G46420, AT2G18790, AT2G23430, AT5G56260, AT4G39800, AT3G08020, AT1G80530, AT1G17830, AT4G37000, AT2G01850, AT1G68990, AT1G06410, AT1G52920, AT3G24210, AT2G46410, AT1G01830, AT1G79470, AT2G23440, AT5G39070, AT2G37760, AT5G14550, AT1G73670, AT3G02050, AT1G15790, AT2G23460, AT5G59820, AT3G23910, AT1G52890, AT3G11540, AT3G56360, AT5G03710, AT1G03780, AT5G62220, AT2G43060, AT5G54470, AT2G42760, AT2G25690, AT1G26270, AT3G10410, AT2G31980, AT1G67090, AT1G66350, AT2G42955, AT5G23850, AT3G15210, AT1G20100, AT2G37750, AT3G23030, AT2G19806, AT1G09270, AT5G54960, AT4G36670, AT5G23930, AT5G54380, AT1G07170, AT2G45670, AT1G80290, AT1G72770, AT1G69720, AT4G27950, AT1G62580, AT1G01480, AT5G51330, AT1G73110, AT2G21510, AT1G32920, AT5G58650, AT2G36410, AT1G15680, AT2G45950, AT4G25380, AT3G60150, AT1G71490, AT1G03990, AT3G24503, AT1G73885, AT5G65300, AT1G69010, AT1G70140, AT2G30990, AT3G27590, AT2G38470, AT3G59760, AT3G14205, AT1G70290, AT1G30110, AT4G37470, AT5G64750, AT3G61185, AT4G26000, AT2G42610, AT4G36370, AT4G37540, AT1G70420, AT2G22830, AT3G47650, AT3G54000, AT3G44320, AT3G02580, AT5G62410, AT1G64080, AT1G75450, AT3G08030, AT5G49700, AT1G71520, AT1G74930, AT5G06390, AT1G51520, AT3G30775, AT4G16370, AT4G28240, AT2G36240, AT2G32970, AT1G80440, AT1G64090, AT3G44310, AT5G66580, AT1G49490, AT1G01720, AT5G57990, AT1G80490, AT5G39240, AT3G50790, AT1G22810, AT5G67030, AT2G28390, AT5G65690, AT5G08130, AT4G02950, AT2G32670, AT5G10510, AT3G21550, AT5G02020, AT2G29080, AT5G08139, AT1G62290, AT1G04130, AT3G14230, AT5G05170, AT1G28335, AT3G62640, AT4G11040, AT2G14210, AT4G36040, AT2G44910, AT5G62670, AT2G36270, AT5G03700, AT5G35670, AT2G18876, AT3G48360, AT3G47630, AT1G16740, AT1G02410, AT2G44660, AT3G46970, AT1G25310, AT3G15240, AT1G50420, AT1G62370, AT3G29575, AT5G10550, AT4G18630, AT5G49690, AT5G65290, AT5G05180, AT3G16000, AT3G27580, AT5G53290, AT2G19800, AT3G62090, AT5G51560, AT5G08270, AT3G57520, AT1G32710, AT2G20520, AT1G69840, AT4G37010, AT4G14690, AT1G27990, AT3G46660, AT3G61830, AT5G65390, AT3G28345, AT4G22190, AT5G67190, AT1G30020, AT3G61640, AT1G76090, AT4G22010, AT3G12120, AT1G31230, AT4G00720, AT2G21520, AT5G67411, AT1G03600, AT1G72820, AT5G14650, AT2G26720, AT5G03370, AT3G55560, AT1G01310, AT3G19580, AT5G20960, AT1G15750, AT2G47000, AT5G54190, AT1G19190, AT5G05965, AT1G78380, AT1G03850, AT3G03150, AT5G09970, AT4G31390, AT1G75360, AT3G11570, AT5G67290, AT5G10750, AT5G54510, AT1G16840, AT1G22190, AT1G67100, AT5G63530, AT2G42870, AT5G51550, AT4G17450, AT1G12440, AT1G01470, AT5G57120, AT2G42430, AT3G21540, AT5G20030, AT1G22400, AT3G21560, AT4G11150, AT3G12300, AT1G15810, AT1G07150, AT5G08230, AT5G10030, AT3G63003, AT3G55980, AT2G45960, AT5G54480, AT5G42750, AT1G78610, AT1G79150, AT5G49710, AT5G39060, AT5G06980, AT1G20990, AT2G47260, AT2G27060, AT5G07440, AT2G47180, AT2G29090, AT3G10420, AT1G67590, AT3G16150, AT5G66880, AT3G12920, AT2G21170, AT3G13310, AT5G63790, AT4G36780, AT5G54970, AT3G47640, AT1G16730, AT5G20190, AT1G28360, AT3G61160, AT5G60670, AT1G75810, AT4G10010, AT3G62630, AT1G13245, AT2G42770, AT5G24470, AT3G47940, AT1G25320, AT2G32160, AT3G47430, AT3G47950, AT1G80340, AT1G78700, AT3G60400, AT3G50800, AT5G13760, AT2G38465, AT3G10405, AT5G51340, AT5G67360, AT1G04120, AT3G54810, AT1G53180, AT1G69030, AT5G65590, AT5G65660, AT2G44650, AT4G00310, AT1G71930, AT3G61680, AT4G01120, AT5G67480, AT3G45060, AT2G46225, AT5G02540, AT2G42780, AT1G04360, AT1G64620, AT5G02200, AT5G39090, AT5G05430, AT5G65400, AT4G35850, AT5G13730, AT1G21590, AT3G50730, AT3G01470, AT4G22000, AT1G09260, AT4G39920, AT1G24260, AT2G38210, AT3G63006, AT3G15200, AT1G70790, AT1G20900, AT1G20970, AT5G06990, AT3G17830, AT4G01130, AT5G67070, AT4G27970, AT5G14640, AT2G25470, AT1G03590, AT4G23110, AT5G44220, AT1G25540, AT3G10415, AT3G02550, AT4G25390, AT5G28300, AT3G24220, AT2G45910, AT2G31580, AT4G37550, AT1G33060, AT4G36880, AT1G70150, AT4G37870, AT1G01550, AT1G17840, AT1G05690, AT2G40610, AT4G36790, AT5G27320, AT1G15550, AT3G53720, AT4G37880, AT3G60690, AT5G65380, AT2G37740, AT1G03810, AT1G25550, AT1G73900, AT1G09570, AT1G24265, AT2G20515, AT1G56600, AT3G58620, AT2G25460, AT4G03010, AT1G68670, AT3G56350, AT1G15670, AT5G63800, AT5G05600, AT4G25260, AT2G34940, AT1G12420, AT1G01260, AT4G34540, AT1G49500, AT1G73687, AT3G05120, AT1G27980, AT1G23710, AT2G20180, AT5G07020, AT4G39850, AT1G73480, AT1G03982, AT3G16140, AT2G32660, AT2G21180, AT2G45580, AT5G02530, AT1G73690, AT2G44670, AT4G23635, AT1G71070, AT1G16850, AT4G31540, AT4G38430, AT5G59810, AT3G13320, AT1G04160, AT5G64260, AT3G12320, AT1G11720, AT5G20170, AT5G02580, AT5G66740, AT4G34530, AT1G08560, AT1G26770, AT4G03390, AT4G36660, AT5G14570, AT1G33240, AT2G01570, AT3G03170, AT5G05590, AT2G24570, AT5G60860, AT4G36000, AT2G46970, AT1G79160, AT1G30040, AT5G62000, AT3G02540, AT1G08570, AT3G57870, AT5G65900, AT3G61430, AT4G33800, AT1G20960, AT4G01250, AT2G43500, AT1G49780, AT2G27500, AT4G17460, AT4G28230, AT1G01250, AT2G47010, AT3G63350, AT4G23060, AT2G42340, AT5G47060, AT2G45590, AT1G51510, AT1G74940, AT2G36030, AT1G09245, AT4G32300, AT1G14720, AT3G61420, AT5G67060, AT5G07010, AT1G08100, AT1G76080, AT1G15125, AT3G61182, AT1G60190, AT5G54980, AT2G36380, AT1G79170, AT3G50240, AT1G56220, AT2G44080, AT5G14200, AT1G69890, AT1G20110, AT5G04590, AT1G73880, AT1G77490, AT3G17860, AT4G13520, AT4G23750, AT5G67500, AT3G24040, AT5G63520, AT2G42960, AT4G36010, AT4G24660, AT4G11820, AT1G23700, AT1G22770, AT1G19210, AT2G40220, AT1G75830, AT5G05250, AT5G03140, AT1G80600, AT1G68690, AT5G62390, AT5G20200, AT3G21720, AT4G23100, AT2G45820, AT4G16490, AT1G75480, AT1G13950, AT5G61590, AT5G65440, AT1G73540, AT4G36030, AT1G80280, AT1G22060, AT4G25500, AT5G06970, AT4G32020, AT1G79490, AT2G20530, AT1G03630, AT5G08335, AT4G32480, AT5G35657, AT2G36080, AT5G05440, AT1G71100, AT3G05110, AT5G23280, AT1G72810, AT2G41240, AT4G29790, AT1G78390, AT2G38220, AT1G72470, AT1G67785, AT3G13960, AT3G16820, AT3G14240, AT4G17500, AT4G27300, AT3G25870, AT5G64420, AT1G20050, AT4G27460, AT1G12450, AT5G23860, AT5G51460, AT1G14730, AT3G19590, AT2G16650, AT3G04730, AT5G14180, AT3G05880, AT2G05520, AT4G17230, AT2G20510, AT1G01730, AT1G03610, AT3G14360, AT4G01245, AT2G43490, AT1G19110, AT1G64700, AT2G42350, AT1G31240, AT5G67300, AT3G21090, AT1G76990, AT5G66640, AT1G19200, AT2G22840, AT1G04690, AT2G36020, AT4G38440, AT1G75490, AT1G27210, AT3G05640, AT5G58000, AT4G10020, AT4G03420, AT5G11530, AT4G31800, AT5G62660, AT1G08980, AT3G14050, AT5G01720, AT5G01950, AT4G37480, AT1G75340, AT5G66590, AT5G56270, AT4G11140, AT3G18080, AT3G02040, AT5G05240, AT5G65280, AT1G05680, AT1G78630, AT3G57020, AT1G71090, AT2G16660, AT1G74950, AT5G64550, AT3G29577, AT1G19180, AT5G02260, AT1G70560, AT3G59140, AT2G28420, AT1G76600, AT1G07430, AT3G15220, AT1G19450, AT5G02570, AT1G28330, AT2G31390, AT3G06500, AT3G47340, AT1G02350, AT3G50660, AT1G73530, AT2G45830, AT5G66730, AT5G58350, AT2G46710, AT4G11050, AT4G22590, AT1G01650, AT3G63340, AT2G01150, AT1G71080, AT4G19700, AT1G30440, AT5G58610, AT3G23920, AT5G58330, AT3G07250, AT5G13700, AT3G26510, AT5G59230, AT3G29370, AT4G08950, AT1G67310

Protein-protein interaction network

The number of partners (degree) is: 24 (Top10%)

click to view PPI network

Differentially expressed condition

16 conditions

SeriesControlTreatmentLog2FCAdj. P value
GSE11807Col, WT, water 4 hCol, WT, Flg22 4 h-2.065.90E-03
GSE17464Laer, controlLaer, Alternaria brassicicola 3 d1.896.24E-05
GSE17464Penta, controlPenta, Alternaria brassicicola 3 d1.963.17E-05
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-2.355.42E-09
GSE21920Col, WT, mockCol, WT, Pto HopZ1a 6 h-1.632.81E-06
GSE37269St0, WT, controlSt0, WT, TEV 21 d-2.361.15E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-2.336.04E-16
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-2.376.55E-16
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-1.983.66E-15
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.616.57E-14
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-1.847.98E-15
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.571.22E-10
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-2.095.55E-13
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-1.859.93E-05
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-1.791.12E-05
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h-1.571.02E-02

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