Gene: AT2G18790
     


Gene description


TAIR ID: AT2G18790

Short description: phytochrome B

Pathogen responsiveness: -1.68

General responsiveness: -2.52

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G124532  

Wheat: No orthologous gene

GO biological process


protein-chromophore linkage, circadian regulation of calcium ion oscillation, response to cold, response to temperature stimulus, transcription, DNA-templated, negative regulation of transcription, red, far-red light phototransduction, regulation of transcription, photomorphogenesis, photosynthesis, jasmonic acid mediated signaling pathway, protein-tetrapyrrole linkage, transpiration, response to low fluence blue light stimulus by blue low-fluence system, detection of visible light, entrainment of circadian clock, protein-phytochromobilin linkage, regulation of seed germination, abscisic acid metabolic process, regulation of photoperiodism, flowering, stomatal complex development, red light signaling pathway, phototropism, regulation of defense response, response to low fluence red light stimulus, gravitropism, response to far red light, chromatin organization


GO cellular component


nucleus, nuclear body, cytosol, nuclear speck, plasma membrane


GO molecular function


protein binding, far-red light photoreceptor activity, protein histidine kinase activity, sequence-specific DNA binding, promoter-specific chromatin binding, signal transducer activity, protein homodimerization activity, red or far-red light photoreceptor activity, identical protein binding, red light photoreceptor activity, G-protein coupled photoreceptor activity


Protein domain


PfamPF08446, PAS fold
PfamPF00512, His Kinase A (phospho-acceptor) domain
PfamPF00360, Phytochrome region
PfamPF01590, GAF domain
PfamPF00989, PAS fold
PfamPF02518, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
SMARTSM00387, HATPase_c
SMARTSM00091, PAS
SMARTSM00388, HisKA
SMARTSM00065, GAF

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT2G20180, AT2G43010, AT1G09530, AT4G31800

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 66 (Top5%)

click to view PPI network

Differentially expressed condition


1 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-2.902.91E-03






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