gene detail

Gene description

TAIR ID: AT3G12920

Short description: SBP (S-ribonuclease binding protein) family protein

Pathogen responsiveness: -1.08

General responsiveness: -0.52

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G035821 GRMZM2G055037

Wheat: No orthologous gene

GO biological process

regulation of programmed cell death, proteasome-mediated ubiquitin-dependent protein catabolic process, defense response

GO cellular component

nucleus, cytoplasm

GO molecular function

metal ion binding, transferase activity

Protein domain

Pfam	PF13920, Zinc finger, C3HC4 type (RING finger)

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G53660, AT5G13790, AT1G24260, AT2G20180, AT5G61850, AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Penta, control	Penta, Flg22 2 h	-1.61	3.74E-03
GSE21920	Col, ulp1, mock	Col, ulp1, Pto 6 h	1.66	9.26E-05
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.78	9.45E-03
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	1.89	5.62E-07
GSE56094	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	1.52	2.70E-07
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	1.65	7.37E-09