gene detail

Gene description

TAIR ID: AT2G42280

Short description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Pathogen responsiveness: -0.71

General responsiveness: -0.58

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G153454

Wheat: No orthologous gene

GO biological process

regulation of transcription, DNA-templated, photoperiodism, flowering, transcription from RNA polymerase II promoter

GO cellular component

nucleus

GO molecular function

transcription factor activity, sequence-specific DNA binding, DNA binding, core promoter sequence-specific DNA binding, transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding, protein dimerization activity

Protein domain

Pfam	PF00010, Helix-loop-helix DNA-binding domain
SMART	SM00353, HLH

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G24260, AT2G20180

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 4

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.71	2.99E-09
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	1.68	3.30E-09
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.89	4.74E-10
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	2.22	1.39E-11
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.53	4.40E-02
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-3.55	3.45E-06