gene detail

Gene description

TAIR ID: AT1G15750

Short description: Transducin family protein / WD-40 repeat family protein

Pathogen responsiveness: -1.91

General responsiveness: -2.23

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat:

TA.4428.1.S1_AT

GO biological process

jasmonic acid mediated signaling pathway, transcription, DNA-templated, negative regulation of transcription, primary shoot apical meristem specification, xylem and phloem pattern formation, response to auxin

GO cellular component

cytosol, nucleus

GO molecular function

protein binding, identical protein binding, protein homodimerization activity

Protein domain

Pfam	PF00400, WD domain, G-beta repeat
SMART	SM00667, LisH
SMART	SM00320, WD40
SMART	SM00668, CTLH

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT1G24260, AT2G20180, AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 118 (Top5%)

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.60	1.12E-09
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.56	1.00E-09
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	1.91	1.42E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	1.93	1.40E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	1.58	2.14E-08