gene detail

Gene description

TAIR ID: AT3G47640

Short description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Pathogen responsiveness: -1.70

General responsiveness: -1.26

Orthologous

Rice:

OS03G0379300 OS07G0628500 OS07G0543000

Maize:

GRMZM2G350312

Wheat:

TAAFFX.93175.2.S1_AT

GO biological process

regulation of transcription, DNA-templated, iron ion homeostasis, cellular response to iron ion starvation, transcription

GO cellular component

nucleus

GO molecular function

transcription factor activity, sequence-specific DNA binding, protein binding, protein dimerization activity, DNA binding

Protein domain

No domain annotation

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT2G20180, AT2G43010

Target:
AT2G46930, AT2G46920, AT3G02140, AT3G57080, AT5G45430, AT2G15450, AT5G03140, AT5G03210, AT5G45310, AT2G46060, AT3G47660, AT4G01730, AT1G74780, AT4G00585, AT2G30090, AT1G03080, AT1G72450, AT1G11840, AT1G72440, AT2G24550, AT3G15200, AT3G57070, AT1G03090, AT1G74770, AT3G57060, AT2G14210, AT1G24400, AT5G14960, AT2G33710, AT2G24545, AT4G00590, AT3G15210, AT3G55430, AT2G24560, AT5G13730, AT1G11820, AT1G74790, AT1G23020, AT5G13740, AT5G14950, AT3G21650, AT3G13710, AT4G23010, AT1G68580, AT4G36920, AT3G47630, AT2G14850, AT3G13700, AT2G15440, AT1G03840, AT1G23030, AT5G04590, AT1G56430, AT3G47430, AT5G24470, AT1G56220, AT1G72460, AT3G55440, AT3G47650, AT2G33720, AT5G45307, AT3G21640, AT5G03230, AT2G30100, AT3G48130, AT1G24420, AT5G45410, AT3G47420, AT3G48140

Protein-protein interaction network

The number of partners (degree) is: 16 (Top20%)

click to view PPI network

Coexpression network

GSE5686_WT_GO view
GSE26679_EDR1_GC view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.74	6.85E-04
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.58	1.27E-03
GSE26679	Col, WT, GC 0 h	Col, WT, GC 96 h	1.69	1.30E-07
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 96 h	1.71	1.21E-07
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	1.93	4.95E-03
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.54	3.37E-03