gene detail

Gene description

TAIR ID: AT1G66350

Short description: RGA-like 1

Pathogen responsiveness: -0.35

General responsiveness: -1.24

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

negative regulation of gibberellic acid mediated signaling pathway, salicylic acid mediated signaling pathway, response to ethylene, negative regulation of seed germination, response to gibberellin, regulation of transcription, DNA-templated, regulation of seed dormancy process, regulation of reactive oxygen species metabolic process, gibberellic acid mediated signaling pathway, response to salt stress, jasmonic acid mediated signaling pathway, cell differentiation, hyperosmotic salinity response, flower development, transcription, response to abscisic acid

GO cellular component

nucleus

GO molecular function

protein binding, transcription factor activity, sequence-specific DNA binding

Protein domain

Pfam	PF03514, GRAS domain family
Pfam	PF12041, Transcriptional regulator DELLA protein N terminal
SMART	SM01129, DELLA

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04075: Plant hormone signal transduction

Transcriptional regulation

Regulator:
AT5G53660, AT5G13790, AT2G38250, AT3G14230, AT4G36920, AT2G20180, AT2G43010, AT5G14750, AT4G36990

Target:
AT2G41940

Protein-protein interaction network

The number of partners (degree) is: 14 (Top20%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

11 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	2.30	1.85E-11
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	2.46	4.01E-12
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	2.49	3.67E-12
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	2.91	1.06E-13
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.64	7.75E-05
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-2.06	9.08E-04
GSE37269	Wt1, WT, control	Wt1, WT, TEV 21 d	-1.52	4.64E-02
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.54	4.06E-13
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	-2.37	2.60E-11
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-2.58	7.75E-12
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.67	1.77E-03