gene detail

Gene description

TAIR ID: AT1G70420

Short description: Protein of unknown function (DUF1645)

Pathogen responsiveness: 0.44

General responsiveness: 0.12

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat:

TAAFFX.12044.1.S1_AT

GO biological process

response to karrikin

GO cellular component

nucleus

GO molecular function

ligase activity

Protein domain

Pfam	PF07816, Protein of unknown function (DUF1645)

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT1G24260, AT2G20180, AT5G61850, AT2G43010

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE26679_EDR1_GC  view

Differentially expressed condition

28 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE13739	Col, WT, control 0 h	Col, WT, G.orontii 6 h	-2.49	3.14E-15
GSE13739	Col, WT, control 7 d	Col, WT, G.orontii 7 d	-1.64	2.02E-10
GSE13739	Col, eds, control 0 h	Col, eds, G.orontii 6 h	-2.80	4.75E-17
GSE13739	Col, eds, control 7 d	Col, eds, G.orontii 7 d	-1.85	1.42E-11
GSE16472	Col, WT, Flg22 0 min	Col, WT, Flg22 30 min	4.36	1.22E-02
GSE16472	Col, WT, Flg22 0 min	Col, WT, Flg22 60min	3.48	1.79E-02
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 1 h	2.30	1.49E-03
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 2 h	2.17	2.01E-03
GSE17464	Laer, control	Laer, Alternaria brassicicola 3 d	1.89	4.08E-03
GSE17464	Laer, control	Laer, Flg22 1 h	3.13	2.24E-06
GSE17464	Laer, control	Laer, Flg22 2 h	2.69	4.81E-05
GSE17464	Penta, control	Penta, Flg22 2 h	3.32	7.10E-07
GSE17464	Penta, control	Penta, Flg22 2 h	2.75	3.10E-05
GSE2169	Col, WT, water	Col, WT, chitin 30 min	1.78	8.17E-10
GSE2169	Col, rre1, water	Col, rre1, chitin 30 min	2.50	2.02E-12
GSE2169	Col, rre2, water	Col, rre2, chitin 30 min	2.34	6.26E-12
GSE2538	Col, WT, control	Col, WT, crab shell chitin 30 min	3.42	5.46E-06
GSE2538	Col, WT, control	Col, WT, purified chitin octamer 30 min	2.55	5.22E-05
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.51	7.53E-06
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.87	1.75E-11
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.60	7.61E-09
GSE4746	Col, WT, water 30 min	Col, WT, chitooctaose 30 min	2.09	8.05E-04
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	2.92	1.38E-03
GSE5615	Col, WT, water 1 h	Col, WT, Flg22 1 h	1.67	1.91E-02
GSE5615	Col, WT, water 1 h	Col, WT, HrpZ 1 h	1.74	1.48E-02
GSE6176	Col, WT, control 4 h	Col, WT, PstDC3000 AvrRpm1 4 h	1.81	3.32E-02
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	1.58	5.15E-03
GSE8319	Col, WT, control	Col, WT, chitooctaose 30 min	1.57	4.46E-11