Gene description
TAIR ID: AT5G13730
Short description: sigma factor 4
Pathogen responsiveness: 0.80
General responsiveness: 2.88
Orthologous
GO biological process
regulation of transcription, DNA-templated, cellular response to light stimulus, regulation of RNA biosynthetic process, DNA-templated transcription, initiation
GO cellular component
chloroplast
GO molecular function
DNA-directed 5'-3' RNA polymerase activity, sigma factor activity, DNA binding, transcription factor activity, sequence-specific DNA binding, plastid sigma factor activity
Protein domain
| Pfam | PF04542, Sigma-70 region 2 |
| Pfam | PF04545, Sigma-70, region 4 |
| Pfam | PF04539, Sigma-70 region 3 |
Metabolic pathway
Not involved in metabolic pathway
KEGG pathway
Not involved in KEGG pathway
Transcriptional regulation
Regulator:
AT1G24260, AT3G47640, AT2G20180, AT2G43010, AT4G36990
Target:
none
Protein-protein interaction network
No Interactor
Coexpression network
Differentially expressed condition 
30 conditions
| Series | Control | Treatment | Log2FC | Adj. P value |
|---|---|---|---|---|
| GSE11807 | Col, ERF104 ox, water 4 h | Col, ERF104 ox, Flg22 4 h | -1.85 | 4.98E-02 |
| GSE12856 | Col, WT, control | Col, WT, Bg h | -2.18 | 4.29E-07 |
| GSE12856 | Col, ataf1, control | Col, ataf1, Bg h | -2.74 | 3.83E-08 |
| GSE13739 | Col, WT, control 7 d | Col, WT, G.orontii 7 d | -1.59 | 1.45E-08 |
| GSE17464 | Laer, JA+Flg22 0 h | Laer, JA+Flg22 1 h | -2.14 | 1.14E-02 |
| GSE17464 | Laer, JA+Flg22 0 h | Laer, JA+Flg22 2 h | -1.99 | 1.42E-02 |
| GSE17464 | Laer, control | Laer, Flg22 1 h | -2.30 | 2.52E-03 |
| GSE17464 | Laer, control | Laer, Flg22 2 h | -2.68 | 4.27E-04 |
| GSE17464 | Penta, control | Penta, Flg22 2 h | -2.87 | 1.57E-04 |
| GSE17464 | Penta, control | Penta, Flg22 2 h | -2.82 | 1.96E-04 |
| GSE17500 | Col, 35S:AFB1, control 0 h | Col, 35S:AFB1, PstDC3000 24 h | -2.42 | 8.68E-06 |
| GSE17500 | Col, WT, control 0 h | Col, WT, PstDC3000 24 h | -2.14 | 9.43E-06 |
| GSE17500 | Col, miR393, control 0 h | Col, miR393, PstDC3000 24 h | -2.58 | 4.45E-06 |
| GSE18978 | Col, WT, control 24 h | Col, WT, PsmES4326 24 h | -4.12 | 2.75E-10 |
| GSE21920 | Col, WT, mock | Col, WT, Pto HopZ1a 6 h | -2.32 | 2.22E-09 |
| GSE37269 | St0, WT, control | St0, WT, TEV 21 d | -2.17 | 6.51E-04 |
| GSE40544 | Col, WT, control | Col, WT, PstDC3000 AvrRpt2 | -1.60 | 5.23E-04 |
| GSE40544 | Col, WT, control | Col, WT, PstDC3000 EV | -2.42 | 8.20E-06 |
| GSE40544 | Col, Sid2, control | Col, Sid2, PstDC3000 AvrRpt2 | -1.68 | 3.51E-04 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 12 h | -3.06 | 3.50E-12 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 8 h | -1.98 | 2.48E-09 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 12 h | -3.12 | 2.94E-12 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 4 h | -2.58 | 5.46E-11 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 8 h | -3.50 | 4.98E-13 |
| GSE45214 | Col, med16, PstDC3000 AvrRpt2 0 h | Col, med16, PstDC3000 AvrRpt2 4 h | -2.40 | 3.43E-12 |
| GSE5520 | Col, WT, control 10 h | Col, WT, Cor- 10 h | -2.93 | 4.04E-04 |
| GSE5520 | Col, WT, control 7 h | Col, WT, PstDC3000 7 h | -3.89 | 7.01E-07 |
| GSE58954 | Col, WT, Psm AvrRpt2 0 h | Col, WT, Psm AvrRpt2 6 h | -2.89 | 9.78E-04 |
| GSE6176 | Col, WT, control 12 h | Col, WT, PstDC3000 HrpA- 12 h | -2.24 | 4.97E-06 |
| GSE6176 | Col, WT, control 12 h | Col, WT, PstDC3000 12 h | -2.66 | 1.28E-07 |
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