Gene: AT3G57520
     

Gene description


TAIR ID: AT3G57520

Short description: seed imbibition 2

Pathogen responsiveness: 1.04

General responsiveness: 0.82

GO biological process


response to karrikin, response to oxidative stress, raffinose catabolic process


GO cellular component


cytoplasm, plasmodesma


GO molecular function


hydrolase activity, hydrolyzing O-glycosyl compounds, raffinose alpha-galactosidase activity, catalytic activity


Protein domain


PfamPF05691, Raffinose synthase or seed imbibition protein Sip1

Transcriptional regulation


Regulator:
AT5G13790, AT2G36270, AT5G11260, AT2G20180, AT1G32640, AT2G26150

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 3

click to view PPI network

Differentially expressed condition


36 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, WT, controlCol, WT, Bg h2.035.56E-07
GSE13739Col, WT, control 0 hCol, WT, G.orontii 6 h2.877.57E-06
GSE13739Col, eds, control 0 hCol, eds, G.orontii 6 h2.461.02E-04
GSE17464Laer, controlLaer, Alternaria brassicicola 3 d-3.262.16E-06
GSE17464Laer, controlLaer, PstDC3000 12 h-2.161.72E-03
GSE17464Laer, controlLaer, Flg22 2 h-1.671.12E-02
GSE17464Penta, controlPenta, Alternaria brassicicola 3 d-1.808.33E-03
GSE17464Penta, controlPenta, PstDC3000 12 h-2.696.25E-05
GSE17500Col, 35S:AFB1, control 0 hCol, 35S:AFB1, PstDC3000 24 h2.701.68E-05
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h3.271.60E-06
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h3.641.61E-06
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h4.276.05E-09
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h1.715.17E-06
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h1.975.84E-07
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h2.023.75E-07
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h2.361.89E-08
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-1.658.94E-03
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.773.00E-03
GSE37269Wt1, WT, controlWt1, WT, TEV 21 d-1.859.07E-03
GSE40544Col, WT, controlCol, WT, PstDC3000 EV2.411.74E-03
GSE40544Col, Sid2, controlCol, Sid2, PstDC3000 EV2.592.47E-03
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h2.711.52E-10
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h3.606.78E-13
GSE50526Col, WT, mock 9 hCol, WT, A. brassicicola 9 h2.463.53E-03
GSE52979Col, WT, acetoneCol, WT, acetone flg22_2 h2.116.59E-07
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_2 h2.232.75E-07
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h2.751.90E-03
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h3.532.43E-14
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h3.242.30E-12
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h2.731.07E-09
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h3.231.49E-12
GSE56094Col, WT, control 6 hCol, WT, PstDC3000 6 h2.115.41E-06
GSE56094Col, WT, control 7 hCol, WT, PstDC3000 7 h2.383.26E-07
GSE56094Col, WT, control 8 hCol, WT, PstDC3000 8 h3.433.70E-13
GSE56094Col, WT, control 9 hCol, WT, PstDC3000 9 h2.751.75E-09
GSE6556Col, gh3.5, controlCol, gh3.5, PstDC3000 AvrRpt2 48 h2.041.27E-04






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