Gene: AT3G55980
     

Gene description


TAIR ID: AT3G55980

Short description: salt-inducible zinc finger 1

Pathogen responsiveness: 1.21

General responsiveness: 1.43

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


response to chitin, regulation of transcription, DNA-templated


GO cellular component


nucleus


GO molecular function


transcription factor activity, sequence-specific DNA binding, metal ion binding, DNA binding


Protein domain


PfamPF13637, Ankyrin repeats (many copies)
PfamPF00642, Zinc finger C-x8-C-x5-C-x3-H type (and similar)
SMARTSM00248, ANK
SMARTSM00356, ZnF_C3H1

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790, AT2G38250, AT5G11260, AT4G36920, AT1G24260, AT2G20180, AT5G61850, AT4G31800

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


44 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, ataf1, controlCol, ataf1, Bg h1.841.73E-05
GSE13739Col, WT, control 0 hCol, WT, G.orontii 6 h2.021.66E-04
GSE13739Col, WT, control 7 dCol, WT, G.orontii 7 d1.891.53E-04
GSE13739Col, eds, control 0 hCol, eds, G.orontii 6 h2.622.25E-06
GSE13739Col, eds, control 7 dCol, eds, G.orontii 7 d1.631.65E-03
GSE16472Col, WT, Flg22 0 minCol, WT, Flg22 30 min3.914.30E-02
GSE17464Laer, controlLaer, Flg22 1 h2.227.17E-04
GSE17464Penta, controlPenta, Flg22 2 h1.913.63E-03
GSE18329Col, WT, controlCol, WT, Hpa noco2 96 h2.441.09E-14
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h2.035.40E-06
GSE2169Col, WT, waterCol, WT, chitin 30 min2.033.77E-08
GSE2169Col, rre1, waterCol, rre1, chitin 30 min2.352.35E-09
GSE2169Col, rre2, waterCol, rre2, chitin 30 min1.964.38E-08
GSE2538Col, WT, controlCol, WT, crab shell chitin 30 min3.161.10E-07
GSE2538Col, WT, controlCol, WT, purified chitin octamer 30 min3.081.51E-07
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h-1.748.70E-08
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h-1.593.14E-07
GSE26679Col, WT, GC 0 hCol, WT, GC 96 h-1.891.15E-07
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h-1.661.49E-07
GSE26679Col, edr1, GC 0 hCol, edr1, GC 96 h-1.881.50E-07
GSE40544Col, WT, controlCol, WT, PstDC3000 EV1.571.78E-04
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h1.989.52E-10
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h2.101.50E-10
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h4.016.91E-13
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h2.722.55E-10
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h3.373.43E-12
GSE45214Col, npr1, PstDC3000 AvrRpt2 0 hCol, npr1, PstDC3000 AvrRpt2 4 h3.584.92E-12
GSE4746Col, WT, water 30 minCol, WT, chitooctaose 30 min2.997.63E-05
GSE50526Col, WT, mock 9 hCol, WT, A. brassicicola 9 h3.295.52E-09
GSE56094Col, WT, control 2 hCol, WT, hrpA- 2 h1.541.39E-03
GSE56094Col, WT, control 6 hCol, WT, hrpA- 6 h1.651.78E-04
GSE56094Col, WT, control 7 hCol, WT, hrpA- 7 h1.919.49E-06
GSE56094Col, WT, control 8 hCol, WT, hrpA- 8 h1.542.13E-04
GSE5615Col, WT, GST 4 hCol, WT, GST+NPP1 4 h1.744.69E-04
GSE5615Col, WT, water 4 hCol, WT, Flg22 4 h2.231.12E-05
GSE5615Col, WT, water 4 hCol, WT, HrpZ 4 h3.561.56E-09
GSE5616Col, WT, water 6 hCol, WT, P. infestans 6 h2.302.87E-03
GSE73351Ws-4, map65_3, controlWs-4, map65_3, H.ara Emwa1 3 d1.534.06E-02
GSE8319Col, WT, controlCol, WT, chitooctaose 30 min2.981.99E-14
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h3.342.97E-04
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 90-105 min2.971.46E-03
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 2-4 h2.801.34E-03
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h1.922.14E-02
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 90-105 min2.471.30E-03






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