gene detail

Gene description

TAIR ID: AT1G20960

Short description: U5 small nuclear ribonucleoprotein helicase, putative

Pathogen responsiveness: -3.05

General responsiveness: -2.00

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G026991

Wheat: No orthologous gene

GO biological process

vegetative to reproductive phase transition of meristem, RNA splicing, embryo development ending in seed dormancy, mRNA processing

GO cellular component

nucleus, spliceosomal complex, nucleolus, membrane, cytosol

GO molecular function

helicase activity, ATP binding, protein binding, RNA binding, ATP-dependent helicase activity

Protein domain

Pfam	PF00270, DEAD/DEAH box helicase
Pfam	PF00271, Helicase conserved C-terminal domain
Pfam	PF02889, Sec63 Brl domain
SMART	SM00973, Sec63
SMART	SM00490, HELICc
SMART	SM00382, AAA
SMART	SM00487, DEXDc

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03040: Spliceosome

Transcriptional regulation

Regulator:
AT5G13790, AT2G20180, AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 9 (Top20%)

click to view PPI network

Coexpression network

GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view

Differentially expressed condition

1 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.77	3.18E-02