Gene: AT1G09570
     


Gene description


TAIR ID: AT1G09570

Short description: phytochrome A

Pathogen responsiveness: -0.77

General responsiveness: -1.37

Orthologous


Rice:

OS03G0719800   OS03G0309200  

Maize:

GRMZM2G157727  

Wheat: No orthologous gene

GO biological process


protein-tetrapyrrole linkage, red, far-red light phototransduction, regulation of transcription, DNA-templated, response to very low fluence red light stimulus, gravitropism, negative regulation of translation, response to continuous far red light stimulus by the high-irradiance response system, red light signaling pathway, protein-chromophore linkage, response to far red light, detection of visible light, transcription, phototropism, photomorphogenesis, response to arsenic-containing substance


GO cellular component


nucleus, nuclear speck, nuclear body, cytoplasm


GO molecular function


protein binding, red or far-red light photoreceptor activity, phosphorelay sensor kinase activity, protein kinase activity, protein homodimerization activity, signal transducer activity, protein histidine kinase activity, identical protein binding, photoreceptor activity, G-protein coupled photoreceptor activity, far-red light photoreceptor activity


Protein domain


PfamPF08446, PAS fold
PfamPF02518, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
PfamPF00360, Phytochrome region
PfamPF00989, PAS fold
PfamPF01590, GAF domain
SMARTSM00388, HisKA
SMARTSM00387, HATPase_c
SMARTSM00065, GAF
SMARTSM00091, PAS

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT5G13790, AT4G36920, AT2G20180, AT5G61850, AT4G36990

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 27 (Top10%)

click to view PPI network

Differentially expressed condition


7 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17464Penta, controlPenta, Flg22 2 h-2.024.53E-05
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h1.573.73E-09
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h1.831.95E-10
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h1.963.35E-11
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.747.54E-03
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-1.991.50E-13
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-1.991.83E-03






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