Gene description
Orthologous
GO biological process
protein-tetrapyrrole linkage, red, far-red light phototransduction, regulation of transcription, DNA-templated, response to very low fluence red light stimulus, gravitropism, negative regulation of translation, response to continuous far red light stimulus by the high-irradiance response system, red light signaling pathway, protein-chromophore linkage, response to far red light, detection of visible light, transcription, phototropism, photomorphogenesis, response to arsenic-containing substance
GO cellular component
nucleus, nuclear speck, nuclear body, cytoplasm
GO molecular function
protein binding, red or far-red light photoreceptor activity, phosphorelay sensor kinase activity, protein kinase activity, protein homodimerization activity, signal transducer activity, protein histidine kinase activity, identical protein binding, photoreceptor activity, G-protein coupled photoreceptor activity, far-red light photoreceptor activity
Protein domain
Pfam | PF08446, PAS fold |
Pfam | PF02518, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
Pfam | PF00360, Phytochrome region |
Pfam | PF00989, PAS fold |
Pfam | PF01590, GAF domain |
SMART | SM00388, HisKA |
SMART | SM00387, HATPase_c |
SMART | SM00065, GAF |
SMART | SM00091, PAS |
Metabolic pathway
Not involved in metabolic pathway
Transcriptional regulation
Regulator:
AT5G13790, AT4G36920, AT2G20180, AT5G61850, AT4G36990
Target:
none
Protein-protein interaction network
The number of partners (degree) is: 27 (Top10%)
Coexpression network
Differentially expressed condition
7 conditions
Series | Control | Treatment | Log2FC | Adj. P value |
---|---|---|---|---|
GSE17464 | Penta, control | Penta, Flg22 2 h | -2.02 | 4.53E-05 |
GSE26679 | Col, WT, GC 0 h | Col, WT, GC 18 h | 1.57 | 3.73E-09 |
GSE26679 | Col, edr1, GC 0 h | Col, edr1, GC 18 h | 1.83 | 1.95E-10 |
GSE26679 | Col, edr1, GC 0 h | Col, edr1, GC 36 h | 1.96 | 3.35E-11 |
GSE37269 | St0, WT, control | St0, WT, TEV 21 d | -1.74 | 7.54E-03 |
GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 8 h | -1.99 | 1.50E-13 |
GSE58954 | Col, WT, Psm AvrRpt2 0 h | Col, WT, Psm AvrRpt2 6 h | -1.99 | 1.83E-03 |
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