gene detail

Gene description

TAIR ID: AT1G22770

Short description: gigantea protein (GI)

Pathogen responsiveness: 0.24

General responsiveness: 0.03

Orthologous

Rice:

OS01G0182600

Maize:

GRMZM5G844173

Wheat: No orthologous gene

GO biological process

response to karrikin, temperature compensation of the circadian clock, circadian rhythm, cell differentiation, response to blue light, regulation of transcription, DNA-templated, response to far red light, response to cold, response to hydrogen peroxide, red, far-red light phototransduction, positive regulation of long-day photoperiodism, flowering, regulation of circadian rhythm, flower development

GO cellular component

nucleus, cytoplasm, nucleoplasm

GO molecular function

protein binding

Protein domain

No domain annotation

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04712: Circadian rhythm - plant

Transcriptional regulation

Regulator:
AT3G46640, AT2G46830, AT2G20180, AT1G01060

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 20 (Top10%)

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

13 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE13739	Col, WT, control 0 h	Col, WT, G.orontii 6 h	-2.96	8.34E-15
GSE13739	Col, eds, control 0 h	Col, eds, G.orontii 6 h	-3.08	2.36E-15
GSE17464	Laer, control	Laer, PstDC3000 12 h	-3.73	3.69E-13
GSE17464	Penta, control	Penta, PstDC3000 12 h	-3.99	1.95E-14
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	-5.43	8.92E-10
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-3.00	1.10E-05
GSE26679	Col, WT, GC 0 h	Col, WT, GC 96 h	1.74	9.71E-03
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	-4.81	6.62E-09
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	-2.18	3.90E-04
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 96 h	1.82	4.69E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-3.21	3.96E-15
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-3.60	1.00E-15
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	1.89	4.68E-04