gene detail

Gene description

TAIR ID: AT3G54810

Short description: Plant-specific GATA-type zinc finger transcription factor family protein

Pathogen responsiveness: -0.89

General responsiveness: -0.90

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G163200

Wheat: No orthologous gene

GO biological process

seed germination, circadian rhythm, cell differentiation

GO cellular component

transcription factor complex, nucleus

GO molecular function

transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding, RNA polymerase II transcription factor binding, RNA polymerase II regulatory region sequence-specific DNA binding, chromatin binding, zinc ion binding, transcription factor activity, sequence-specific DNA binding

Protein domain

Pfam	PF00320, GATA zinc finger
SMART	SM00401, ZnF_GATA

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT5G11260, AT1G24260, AT2G20180, AT2G43010, AT2G47190

Target:
AT3G10340

Protein-protein interaction network

No Interactor

Coexpression network

GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	1.87	1.94E-06
GSE13739	Col, WT, control 0 h	Col, WT, G.orontii 6 h	1.51	1.73E-03
GSE13739	Col, eds, control 0 h	Col, eds, G.orontii 6 h	1.75	3.06E-04
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	1.51	2.33E-09
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	1.53	3.49E-08
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.67	1.37E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h	1.59	2.07E-02