gene detail

Gene description

TAIR ID: AT5G24470

Short description: pseudo-response regulator 5

Pathogen responsiveness: -0.06

General responsiveness: 0.51

Orthologous

Rice:

OS11G0157600 OS07G0695100 OS02G0618200

Maize:

GRMZM2G367834

Wheat: No orthologous gene

GO biological process

regulation of transcription, DNA-templated, response to far red light, rhythmic process, photomorphogenesis, response to red light, phosphorelay signal transduction system, circadian rhythm, transcription, negative regulation of transcription, nuclear import

GO cellular component

intracellular, nucleus, cell

GO molecular function

phosphorelay response regulator activity, protein binding

Protein domain

Pfam	PF06203, CCT motif
Pfam	PF00072, Response regulator receiver domain
SMART	SM00448, REC

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04712: Circadian rhythm - plant

Transcriptional regulation

Regulator:
AT5G13790, AT2G38250, AT3G47640, AT2G20180, AT5G49450

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 13 (Top20%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

12 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE13739	Col, WT, control 0 h	Col, WT, G.orontii 6 h	-3.46	1.99E-16
GSE13739	Col, eds, control 0 h	Col, eds, G.orontii 6 h	-3.45	2.61E-16
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	3.42	2.03E-05
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	2.12	3.40E-03
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	3.61	8.66E-06
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	2.87	1.22E-04
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.33	2.21E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-3.89	3.65E-16
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_24 h	1.59	1.07E-05
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	1.54	2.55E-07
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	1.79	2.77E-09
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	2.83	1.61E-06