gene detail

Gene description

TAIR ID: AT1G72450

Short description: jasmonate-zim-domain protein 6

Pathogen responsiveness: -0.32

General responsiveness: 0.22

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

negative regulation of nucleic acid-templated transcription, regulation of transcription, DNA-templated, defense response, regulation of defense response, transcription, regulation of jasmonic acid mediated signaling pathway, response to jasmonic acid, response to wounding

GO cellular component

nucleus

GO molecular function

protein binding, transcription corepressor activity

Protein domain

Pfam	PF06200, tify domain
Pfam	PF09425, Divergent CCT motif
SMART	SM00979, TIFY

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04075: Plant hormone signal transduction

Transcriptional regulation

Regulator:
AT5G13790, AT3G09230, AT1G24260, AT3G47640, AT2G20180, AT4G36990, AT2G47190

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 22 (Top10%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

16 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	1.67	4.49E-08
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	1.78	1.74E-08
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.88	8.78E-07
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	1.54	1.18E-10
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	1.68	1.19E-08
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	1.53	3.46E-08
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	1.53	4.44E-02
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	2.58	2.55E-05
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	2.33	5.82E-12
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	1.54	2.61E-06
GSE56094	Col, WT, control 5 h	Col, WT, PstDC3000 5 h	1.64	6.93E-06
GSE56094	Col, WT, control 6 h	Col, WT, PstDC3000 6 h	1.69	1.17E-06
GSE56094	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	1.68	1.36E-06
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	1.61	1.31E-06
GSE5616	Col, WT, water 6 h	Col, WT, P. infestans 6 h	1.56	7.67E-09
GSE73351	Ws-4, WT, control	Ws-4, WT, H.ara Emwa1 3 d	2.09	2.97E-02