gene detail

Gene description

TAIR ID: AT1G80420

Short description: BRCT domain-containing DNA repair protein

Pathogen responsiveness: -1.64

General responsiveness: -2.53

Orthologous

Rice:

OS06G0144000

Maize:

GRMZM2G146490

Wheat:

TA.5542.1.S1_AT

GO biological process

positive regulation of polynucleotide 3'-phosphatase activity, DNA demethylation, DNA repair, double-strand break repair via nonhomologous end joining, DNA ligation, positive regulation of DNA-5-methylcytosine glycosylase activity

GO cellular component

nucleus, intracellular

GO molecular function

transcription coactivator activity, protein binding

Protein domain

Pfam	PF00533, BRCA1 C Terminus (BRCT) domain
SMART	SM00292, BRCT

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03410: Base excision repair

Transcriptional regulation

Regulator:
AT5G13790, AT1G24260, AT2G20180

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE26679_EDR1_GC  view

Differentially expressed condition

3 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.67	3.35E-06
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.57	1.81E-09
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.82	6.21E-03