gene detail

Gene description

TAIR ID: AT5G53290

Short description: cytokinin response factor 3

Pathogen responsiveness: -0.96

General responsiveness: 0.16

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

cotyledon development, regulation of transcription, DNA-templated, cytokinin-activated signaling pathway, transcription, transcription factor import into nucleus, ethylene-activated signaling pathway, leaf development

GO cellular component

nucleus, cytoplasm

GO molecular function

protein binding, transcription factor activity, sequence-specific DNA binding, DNA binding

Protein domain

Pfam	PF00847, AP2 domain
SMART	SM00380, AP2

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT2G36270, AT5G11260, AT1G24260, AT2G20180, AT1G32640

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 14 (Top20%)

click to view PPI network

Coexpression network

GSE56094_WT_HRPA-  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.18	3.49E-03
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.72	1.28E-02
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	1.54	4.45E-07
GSE56094	Col, WT, control 4 h	Col, WT, PstDC3000 4 h	1.53	2.50E-07
GSE5615	Col, WT, GST 4 h	Col, WT, GST+NPP1 4 h	1.68	7.74E-04
GSE5615	Col, WT, water 4 h	Col, WT, Flg22 4 h	2.53	1.94E-06
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	2.95	6.36E-08