Gene: AT5G58620
Gene description
TAIR ID: AT5G58620
Short description: zinc finger (CCCH-type) family protein
Pathogen responsiveness: -0.22
General responsiveness: -0.79
Orthologous
Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene
GO biological process
regulation of transcription, DNA-templated
GO cellular component
nucleus
GO molecular function
metal ion binding, DNA binding, transcription factor activity, sequence-specific DNA binding
Protein domain
| Pfam | PF12796, Ankyrin repeats (3 copies) |
| Pfam | PF00642, Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
| SMART | SM00248, ANK |
| SMART | SM00356, ZnF_C3H1 |
Metabolic pathway
Not involved in metabolic pathway
KEGG pathway
Not involved in KEGG pathway
click to view PPI networkCoexpression network
Differentially expressed condition 
15 conditions
| Series | Control | Treatment | Log2FC | Adj. P value |
|---|---|---|---|---|
| GSE18978 | Col, WT, control 24 h | Col, WT, PsmES4326 24 h | 2.23 | 4.76E-11 |
| GSE37269 | Ei2, WT, control | Ei2, WT, TEV 21 d | -1.86 | 2.51E-02 |
| GSE37269 | St0, WT, control | St0, WT, TEV 21 d | -1.67 | 3.19E-02 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 12 h | 2.17 | 4.73E-11 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 8 h | 1.64 | 3.34E-09 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 12 h | 2.59 | 4.08E-12 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 8 h | 2.47 | 6.90E-12 |
| GSE45214 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 4 h | 1.51 | 8.96E-06 |
| GSE45214 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 4 h | 1.77 | 1.23E-06 |
| GSE45214 | Col, med16, PstDC3000 AvrRpt2 0 h | Col, med16, PstDC3000 AvrRpt2 4 h | 2.30 | 1.63E-08 |
| GSE50526 | Col, WT, mock 9 h | Col, WT, A. brassicicola 9 h | 2.13 | 3.12E-03 |
| GSE5520 | Col, WT, control 10 h | Col, WT, Cor- 10 h | 2.35 | 1.38E-05 |
| GSE5520 | Col, WT, control 10 h | Col, WT, Cor- hrpS- 10 h | 1.77 | 5.66E-03 |
| GSE9674 | Ws-4, WT, control | Ws-4, WT, Xanthomonas strain Xcc147 2-4 h | 1.65 | 2.56E-04 |
| GSE9674 | Ws-4, WT, control | Ws-4, WT, Xanthomonas strain Xcc147 90-105 min | 1.75 | 8.32E-05 |
Copyright © 2017 Ziding Zhang's Lab - China Agricultural University. All Rights Reserved.