gene detail

Gene description

TAIR ID: AT1G02340

Short description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Pathogen responsiveness: -0.40

General responsiveness: 0.24

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat:

TAAFFX.629.2.S1_AT TAAFFX.629.2.S1_S_AT

GO biological process

regulation of transcription, DNA-templated, signal transduction, response to light intensity, response to far red light, blue light signaling pathway, transcription, abscisic acid-activated signaling pathway, red, far-red light phototransduction

GO cellular component

nucleus, cytosol

GO molecular function

protein binding, transcription factor activity, sequence-specific DNA binding, DNA binding, protein dimerization activity, transcription cofactor activity

Protein domain

Pfam	PF00010, Helix-loop-helix DNA-binding domain
SMART	SM00353, HLH

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT2G20180, AT4G16780, AT5G61850, AT2G43010, AT1G26945, AT2G46970

Target:
AT5G13930, AT1G29910, AT4G16780

Protein-protein interaction network

The number of partners (degree) is: 19 (Top10%)

click to view PPI network

Coexpression network

GSE45212_MED14_PSTDC3000_AVRRPT2 view

Differentially expressed condition

15 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, PstDC3000 12 h	2.22	4.97E-04
GSE17464	Penta, control	Penta, Flg22 2 h	-1.89	2.43E-03
GSE17464	Penta, control	Penta, Flg22 2 h	-1.87	2.26E-03
GSE18329	Col, wrky72_1, control	Col, wrky72_1, Hpa noco2 96 h	-1.95	5.55E-11
GSE18329	Col, wrky72_1, control	Col, wrky72_2, Hpa noco2 96 h	-1.98	4.47E-11
GSE26679	Col, WT, GC 0 h	Col, WT, GC 96 h	1.74	1.33E-03
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 96 h	3.09	1.14E-06
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.74	1.76E-02
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.88	2.55E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-1.60	8.77E-03
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.50	1.12E-08
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.51	1.96E-07
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	-2.09	8.80E-03
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.86	5.25E-04
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-2.71	6.43E-06