Gene: AT1G47870
     


Gene description


TAIR ID: AT1G47870

Short description: winged-helix DNA-binding transcription factor family protein

Pathogen responsiveness: -2.28

General responsiveness: -2.17

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


cell morphogenesis, glucosinolate metabolic process, transcription, DNA-templated, negative regulation of cell division, regulation of transcription, cell division, DNA endoreduplication


GO cellular component


nucleolus, nucleus, transcription factor complex, cytoplasm


GO molecular function


protein binding, transcription factor activity, sequence-specific DNA binding, protein dimerization activity, protein heterodimerization activity, DNA binding


Protein domain


PfamPF02319, E2F/DP family winged-helix DNA-binding domain
PfamPF16421, E2F transcription factor CC-MB domain
SMARTSM01372, E2F_TDP

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT2G44730, AT4G18770, AT1G61730, AT1G24260, AT5G61890, AT2G40950, AT1G44830

Target:
AT3G02910, AT3G54670, AT3G59550, AT4G07475, AT2G23370, AT5G60720, AT4G26055, AT2G11930, AT3G12280, AT5G12870, AT3G06770, AT5G27870, AT1G22660, AT5G55300, AT2G29605, AT3G54180, AT4G23780, AT1G67750, AT5G43516, AT5G18740, AT1G26550, AT3G18524, AT5G07020, AT5G44030, AT5G04630, AT5G37940, AT3G57930, AT2G16730, AT1G46696, AT3G45160, AT4G02820, AT3G30587, AT2G07690, AT1G15825, AT5G39400, AT1G14130, AT2G38080, AT1G32120, AT5G50510, AT5G59400, AT2G45090, AT5G18550, AT2G07815, AT3G09670, AT2G20840, AT5G04780, AT4G18750, AT5G43530, AT4G25260, AT2G04420, AT2G07724, AT2G40420, AT3G30750, AT5G50620, AT3G56330, AT5G60690, AT4G39800, AT5G23470, AT2G30490, AT2G12700, AT5G29574, AT5G47410, AT4G04250, AT5G13180, AT1G13690, AT2G06285, AT5G35118, AT4G14110, AT5G39390, AT3G10760, AT1G01180, AT4G06495, AT5G25580, AT1G65130, AT2G40600, AT3G06520, AT2G32490, AT5G33310, AT2G16750, AT3G01516, AT3G59270, AT3G02130, AT2G24900, AT5G27490, AT2G01918, AT2G20900, AT1G56415, AT2G21850, AT3G20890, AT2G36307, AT4G06502, AT3G11900, AT3G12060, AT1G57770, AT5G44610, AT2G37560, AT4G16265, AT3G53668, AT5G55660, AT3G16740, AT3G49170, AT2G23380, AT2G11170, AT2G11360, AT1G32110, AT3G02920, AT3G15111, AT5G02910, AT3G13410, AT4G10950, AT3G49180, AT3G55760, AT4G35450, AT1G18500, AT4G07315, AT2G07820, AT1G63020, AT1G20230, AT3G27290, AT3G12040, AT5G06770, AT1G71930, AT2G01010, AT5G14870, AT3G42557, AT4G07688, AT2G45460, AT2G01920, AT2G28560, AT3G18535, AT4G07690, AT4G33330, AT4G10110, AT3G60340, AT4G04635, AT4G06533, AT2G20550, AT4G17270, AT3G17300, AT3G06740, AT1G73190, AT3G02810, AT4G30750, AT5G44635, AT5G58130, AT3G30230, AT4G13890, AT4G33700, AT1G26220, AT5G27230, AT3G59410, AT3G29805, AT1G12080, AT2G07732, AT1G80720, AT5G52950, AT1G26840, AT3G61990, AT2G47230, AT3G04690, AT3G23090, AT4G35130, AT3G16730, AT5G15630, AT5G16600, AT1G30810, AT1G02120, AT5G28295, AT2G34800, AT1G75980, AT3G27520, AT5G17165, AT3G27890, AT1G26540, AT1G56423, AT5G08630, AT4G30760, AT2G36355, AT2G41740, AT3G59380, AT3G32130, AT3G28010, AT4G08657, AT3G49055, AT3G50070, AT3G43850, AT5G49800, AT5G49020, AT2G42750, AT2G37090, AT1G71695, AT1G20515, AT5G50717, AT3G06340, AT1G58350, AT5G57830, AT5G44640, AT4G35940, AT3G19450, AT1G08260, AT3G13420, AT3G10690, AT1G08250, AT4G28370, AT1G17760, AT5G37630, AT3G53670, AT3G24400, AT2G14170, AT2G12710, AT3G18740, AT5G41870, AT3G09660, AT3G52900, AT4G34440, AT1G80190, AT4G06608, AT4G14700, AT5G49300, AT5G42640, AT3G12290, AT4G26220, AT4G14120, AT5G52960, AT5G46320, AT1G64270, AT1G65200, AT1G66610, AT5G05320, AT3G42450, AT5G62380, AT5G09980, AT1G18440, AT5G49190, AT5G41860, AT1G20225, AT3G27060, AT5G17420, AT3G42556, AT1G73940, AT4G32570, AT4G03830, AT3G27640, AT1G11380, AT3G18730, AT1G79060, AT3G26670, AT4G32610, AT3G30490, AT5G45780, AT5G63910, AT5G30410, AT1G15830, AT5G29030, AT3G43790, AT5G60020, AT5G08640, AT3G15520, AT1G19110, AT3G59540, AT2G31270, AT1G05060, AT4G05508, AT1G31270, AT1G26530, AT4G07480, AT4G06501, AT5G13060, AT2G16780, AT4G29080, AT3G30500, AT3G30846, AT4G12917, AT5G22670, AT3G15909, AT1G52450, AT3G11430, AT3G30590, AT5G46280, AT1G32780, AT3G25870, AT3G14800, AT3G06410, AT5G35860, AT2G04410, AT2G23960, AT4G32710, AT1G58590, AT4G04710, AT1G17950, AT5G38930, AT1G55535, AT5G02470, AT2G37678, AT3G17290, AT2G24910, AT1G05020, AT5G35880, AT5G41880, AT1G52430, AT1G67810, AT3G50240, AT2G28110, AT3G53880, AT1G21960, AT2G20110, AT5G53740, AT3G06250, AT1G30490, AT5G38037, AT3G23740, AT1G61820, AT1G48580, AT3G56550, AT4G35930, AT5G30420, AT4G16141, AT5G63920, AT2G38410, AT4G18740, AT3G22260, AT5G64541, AT1G75150, AT4G07720, AT5G34903, AT2G42050, AT2G37640, AT3G02820, AT2G38960, AT1G32680, AT3G41768, AT5G16690, AT3G26680, AT5G47510, AT4G35985, AT3G26160, AT2G24320

Protein-protein interaction network


The number of partners (degree) is: 13 (Top20%)

click to view PPI network

Differentially expressed condition


1 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h1.548.29E-10






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