gene detail

Gene description

TAIR ID: AT5G16600

Short description: myb domain protein 43

Pathogen responsiveness: -1.87

General responsiveness: -0.12

Orthologous

Rice:

OS06G0258000 OS09G0532900

Maize:

GRMZM2G106558

Wheat: No orthologous gene

GO biological process

response to abscisic acid, regulation of transcription from RNA polymerase II promoter, regulation of transcription, DNA-templated, regulation of secondary cell wall biogenesis, cell differentiation

GO cellular component

nucleus

GO molecular function

RNA polymerase II transcription factor activity, sequence-specific DNA binding, transcription regulatory region DNA binding, transcription factor activity, RNA polymerase II transcription factor recruiting

Protein domain

Pfam	PF00249, Myb-like DNA-binding domain
SMART	SM00717, SANT

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G12870, AT2G44730, AT1G32770, AT1G47870, AT1G61730

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2 view
GSE45212_MED14_PSTDC3000_AVRRPT2 view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 96 h	1.64	7.27E-05
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 96 h	1.78	2.17E-05
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.56	6.95E-03
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-2.84	1.52E-03
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	-1.59	1.01E-05
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-1.81	1.93E-06