Gene description
TAIR ID: AT2G46830
Short description: circadian clock associated 1
Pathogen responsiveness: 0.94
General responsiveness: 1.94
Orthologous
GO biological process
regulation of gene expression, regulation of protein homodimerization activity, response to salicylic acid, circadian rhythm, long-day photoperiodism, flowering, negative regulation of transcription, DNA-templated, response to organonitrogen compound, response to cadmium ion, response to salt stress, response to cold, positive regulation of transcription, negative regulation of circadian rhythm, response to abscisic acid, response to jasmonic acid, response to ethylene, response to auxin, response to gibberellin, transcription
GO cellular component
nucleus
GO molecular function
protein binding, transcription factor activity, sequence-specific DNA binding
Metabolic pathway
Not involved in metabolic pathway
Transcriptional regulation
Regulator:
AT3G46640, AT5G59570, AT5G37260, AT2G43010, AT1G09530
Target:
AT1G01580, AT5G28620, AT5G61380, AT2G47840, AT1G01060, AT1G34500, AT4G17910, AT5G28765, AT5G02810, AT3G09505, AT3G55180, AT2G36320, AT3G33570, AT4G08610, AT3G46640, AT3G17820, AT1G29930, AT1G43210, AT5G49450, AT5G15840, AT1G62421, AT2G21200, AT1G37170, AT5G27200, AT2G07692, AT5G18170, AT2G46790, AT2G21660, AT5G64900, AT1G27690, AT3G47340, AT2G40080, AT5G52310, AT1G50190, AT1G73885, AT4G07522, AT1G32900, AT2G47844, AT2G43010, AT1G65480, AT1G22770, AT2G22055, AT1G43240, AT1G29785, AT1G75070, AT1G04400, AT3G59060, AT1G60987, AT2G47850, AT5G57360, AT4G25210, AT2G10330
Protein-protein interaction network
The number of partners (degree) is: 19 (Top10%)
click to view PPI networkCoexpression network
Differentially expressed condition 
12 conditions
| Series | Control | Treatment | Log2FC | Adj. P value |
|---|---|---|---|---|
| GSE13739 | Col, WT, control 0 h | Col, WT, G.orontii 6 h | -1.96 | 4.60E-02 |
| GSE13739 | Col, WT, control 7 d | Col, WT, G.orontii 7 d | -1.85 | 3.72E-02 |
| GSE26679 | Col, WT, GC 0 h | Col, WT, GC 36 h | -8.30 | 7.16E-12 |
| GSE26679 | Col, edr1, GC 0 h | Col, edr1, GC 36 h | -8.37 | 4.03E-12 |
| GSE37269 | St0, WT, control | St0, WT, TEV 21 d | -2.17 | 1.63E-03 |
| GSE40544 | Col, Sid2, control | Col, Sid2, PstDC3000 AvrRpt2 | -1.58 | 3.88E-05 |
| GSE52979 | Col, WT, acetone | Col, WT, acetone flg22_2 h | -2.70 | 2.29E-06 |
| GSE52979 | Col, WT, oxo_C14_HSL | Col, WT, oxo_C14_HSL flg22_2 h | -2.90 | 8.38E-07 |
| GSE56094 | Col, WT, control 11 h | Col, WT, PstDC3000 11 h | -2.00 | 7.60E-17 |
| GSE58954 | Col, WT, Psm AvrRpt2 0 h | Col, WT, Psm AvrRpt2 6 h | -3.38 | 1.20E-03 |
| GSE6556 | Col, WT, control | Col, WT, PstDC3000 AvrRpt2 48 h | -2.10 | 1.30E-02 |
| GSE6556 | Col, gh3.5, control | Col, gh3.5, PstDC3000 AvrRpt2 48 h | -2.14 | 3.20E-03 |
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