gene detail

Gene description

TAIR ID: AT5G61380

Short description: CCT motif -containing response regulator protein

Pathogen responsiveness: -0.26

General responsiveness: -0.22

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G020081

Wheat:

TAAFFX.86800.1.S1_AT TAAFFX.86800.1.S1_X_AT

GO biological process

regulation of transcription, DNA-templated, transcription, circumnutation, flower development, circadian rhythm, phosphorelay signal transduction system, negative regulation of gene expression, regulation of gene expression

GO cellular component

nucleus

GO molecular function

protein binding, transcription factor activity, sequence-specific DNA binding, phosphorelay response regulator activity

Protein domain

Pfam	PF00072, Response regulator receiver domain
Pfam	PF06203, CCT motif
SMART	SM00448, REC

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04712: Circadian rhythm - plant

Transcriptional regulation

Regulator:
AT3G46640, AT2G46830, AT1G24260, AT5G61850, AT1G01060

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 33 (Top5%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view

Differentially expressed condition

13 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 1 h	1.80	7.19E-04
GSE17464	Penta, control	Penta, Flg22 2 h	1.80	7.29E-04
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	3.51	2.22E-14
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	3.99	8.22E-16
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	3.39	3.13E-14
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	4.12	3.45E-16
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	1.55	4.90E-06
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	1.80	7.84E-07
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	1.51	6.46E-06
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	1.61	4.02E-13
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	1.79	2.90E-03
GSE5520	Col, WT, control 10 h	Col, WT, Cor- hrpS- 10 h	1.58	3.83E-02
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.72	3.13E-03