gene detail

Gene description

TAIR ID: AT5G15840

Short description: B-box type zinc finger protein with CCT domain

Pathogen responsiveness: -0.84

General responsiveness: -2.52

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

far-red light signaling pathway, regulation of flower development, regulation of transcription, DNA-templated, cell differentiation, circadian rhythm, transcription, flower development, response to far red light

GO cellular component

nucleus

GO molecular function

protein binding, DNA binding, transcription factor activity, sequence-specific DNA binding, zinc ion binding

Protein domain

Pfam	PF00643, B-box zinc finger
Pfam	PF06203, CCT motif
SMART	SM00336, BBOX

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04712: Circadian rhythm - plant

Transcriptional regulation

Regulator:
AT5G62430, AT2G02450, AT2G46830, AT5G37260, AT3G07650, AT1G51700, AT1G01060

Target:
AT2G22630, AT1G69120, AT1G62960, AT1G65480, AT5G61850, AT3G55610, AT4G20370, AT3G22231, AT2G45660

Protein-protein interaction network

The number of partners (degree) is: 50 (Top5%)

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	3.71	1.25E-05
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	3.31	5.15E-05
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	4.50	6.85E-07
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	4.27	9.96E-07
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.56	1.26E-03
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-1.70	2.61E-04