Gene description
TAIR ID: AT3G59060
Short description: phytochrome interacting factor 3-like 6
Pathogen responsiveness: -0.06
General responsiveness: 2.73
GO biological process
regulation of transcription, DNA-templated, red, far-red light phototransduction, regulation of auxin biosynthetic process, regulation of auxin mediated signaling pathway, ethylene biosynthetic process, transcription, response to low fluence blue light stimulus by blue low-fluence system
GO cellular component
nucleus
GO molecular function
protein dimerization activity, transcription factor activity, sequence-specific DNA binding, protein binding, DNA binding
Metabolic pathway
Not involved in metabolic pathway
KEGG pathway
Not involved in KEGG pathway
Transcriptional regulation
Regulator:
AT5G13790, AT2G46830, AT3G24050, AT2G36270, AT4G34680, AT5G11260, AT2G45050, AT1G24260, AT1G32640, AT3G60530, AT2G43010
Protein-protein interaction network
The number of partners (degree) is: 11 (Top20%)
click to view PPI networkCoexpression network
Differentially expressed condition 
20 conditions
| Series | Control | Treatment | Log2FC | Adj. P value |
|---|---|---|---|---|
| GSE13739 | Col, WT, control 0 h | Col, WT, G.orontii 6 h | -2.01 | 9.82E-10 |
| GSE13739 | Col, eds, control 0 h | Col, eds, G.orontii 6 h | -2.08 | 3.82E-10 |
| GSE17464 | Laer, JA+Flg22 0 h | Laer, JA+Flg22 1 h | -1.99 | 4.31E-02 |
| GSE17464 | Laer, JA+Flg22 0 h | Laer, JA+Flg22 2 h | -2.12 | 2.23E-02 |
| GSE17464 | Penta, control | Penta, Flg22 2 h | -2.20 | 1.19E-02 |
| GSE18978 | Col, WT, control 24 h | Col, WT, PsmES4326 24 h | -1.83 | 1.99E-06 |
| GSE26679 | Col, WT, GC 0 h | Col, WT, GC 18 h | -2.44 | 1.64E-10 |
| GSE26679 | Col, WT, GC 0 h | Col, WT, GC 36 h | -2.86 | 6.20E-12 |
| GSE26679 | Col, edr1, GC 0 h | Col, edr1, GC 18 h | -2.20 | 9.09E-10 |
| GSE26679 | Col, edr1, GC 0 h | Col, edr1, GC 36 h | -2.06 | 1.71E-09 |
| GSE37269 | Ei2, WT, control | Ei2, WT, TEV 21 d | -1.83 | 1.32E-02 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 12 h | -4.83 | 1.27E-19 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 8 h | -2.69 | 1.24E-16 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 12 h | -4.64 | 2.58E-19 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 4 h | -1.62 | 5.35E-14 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 8 h | -2.57 | 1.38E-16 |
| GSE45214 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 4 h | -1.61 | 1.44E-10 |
| GSE45214 | Col, med16, PstDC3000 AvrRpt2 0 h | Col, med16, PstDC3000 AvrRpt2 4 h | -1.89 | 5.31E-12 |
| GSE58954 | Col, WT, Psm AvrRpt2 0 h | Col, WT, Psm AvrRpt2 6 h | -1.68 | 3.51E-03 |
| GSE9674 | Ws-4, AtMYB30 ox, control | Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h | -1.57 | 1.92E-02 |
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