Gene: AT2G21660
     


Gene description


TAIR ID: AT2G21660

Short description: cold, circadian rhythm, and rna binding 2

Pathogen responsiveness: 1.17

General responsiveness: 1.82

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G165901  

Wheat: No orthologous gene

GO biological process


response to cytokinin, response to salt stress, regulation of stomatal movement, vegetative to reproductive phase transition of meristem, DNA duplex unwinding, mRNA export from nucleus, response to cold, innate immune response, circadian rhythm, response to water deprivation, RNA secondary structure unwinding, response to osmotic stress, response to cadmium ion, alternative mRNA splicing, via spliceosome, response to zinc ion


GO cellular component


cytosol, nucleus, chloroplast, cytoplasm, plasmodesma, peroxisome, apoplast, mitochondrion


GO molecular function


protein binding, RNA binding


Protein domain


PfamPF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMARTSM00360, RRM

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT1G13450, AT5G13790, AT2G46830, AT2G38250, AT3G14230, AT1G24260, AT5G61850, AT2G43010, AT1G01060

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 44 (Top5%)

click to view PPI network

Differentially expressed condition


12 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE13739Col, WT, control 0 hCol, WT, G.orontii 6 h-1.598.81E-05
GSE13739Col, eds, control 0 hCol, eds, G.orontii 6 h-1.933.35E-06
GSE17464Laer, controlLaer, Alternaria brassicicola 3 d5.791.67E-09
GSE17464Laer, controlLaer, PstDC3000 12 h4.313.28E-06
GSE17464Penta, controlPenta, Alternaria brassicicola 3 d6.828.43E-12
GSE17464Penta, controlPenta, PstDC3000 12 h5.478.17E-09
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h4.426.87E-16
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h6.351.12E-19
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h4.935.14E-17
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h6.754.57E-20
GSE6556Col, WT, controlCol, WT, PstDC3000 AvrRpt2 48 h2.982.72E-04
GSE6556Col, gh3.5, controlCol, gh3.5, PstDC3000 AvrRpt2 48 h4.829.70E-07






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