gene detail

Gene description

TAIR ID: AT1G29930

Short description: chlorophyll A/B binding protein 1

Pathogen responsiveness: NA

General responsiveness: NA

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

photosynthesis, light harvesting in photosystem I, protein-chromophore linkage, response to light stimulus

GO cellular component

chloroplast envelope, plastoglobule, chloroplast thylakoid membrane, photosystem II, chloroplast thylakoid, photosystem I, chloroplast, light-harvesting complex, thylakoid, integral component of membrane

GO molecular function

pigment binding, metal ion binding

Protein domain

Pfam	PF00504, Chlorophyll A-B binding protein

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath00196: Photosynthesis - antenna proteins

Transcriptional regulation

Regulator:
AT2G46830, AT3G24050, AT3G14230, AT4G36730, AT4G34680, AT5G11260, AT2G45050, AT1G32640, AT3G60530, AT5G61850, AT1G09530, AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 5

click to view PPI network

Coexpression network

GSE56094_WT_HRPA- view
GSE56094_WT_PSTDC3000 view

Differentially expressed condition

9 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.91	5.39E-08
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.42	8.74E-08
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	-1.93	4.73E-05
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-2.09	3.91E-06
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-2.68	6.71E-09
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-2.27	4.49E-07
GSE56094	Col, WT, control 8 h	Col, WT, hrpA- 8 h	-1.84	9.75E-05
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-1.83	6.36E-05
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	-1.96	4.73E-05