gene detail

Gene description

TAIR ID: AT2G22540

Short description: K-box region and MADS-box transcription factor family protein

Pathogen responsiveness: -1.22

General responsiveness: -0.32

Orthologous

Rice:

OS03G0186600

Maize:

GRMZM2G046885

Wheat:

TA.7339.1.S1_AT TA.7339.1.S1_X_AT

GO biological process

positive regulation of transcription from RNA polymerase II promoter, negative regulation of transcription, DNA-templated, maintenance of floral meristem identity, transcription, response to temperature stimulus, floral whorl development, floral meristem determinacy, cell differentiation, negative regulation of flower development

GO cellular component

nucleus

GO molecular function

protein binding, transcription factor activity, sequence-specific DNA binding, translation repressor activity, nucleic acid binding

Protein domain

Pfam	PF01486, K-box region
Pfam	PF00319, SRF-type transcription factor (DNA-binding and dimerisation domain)
SMART	SM00432, MADS

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT1G69120, AT1G24260

Target:
AT1G68410, AT4G28040, AT3G14067, AT4G35900, AT4G04885, AT4G14270, AT3G51210, AT5G48170, AT3G16020, AT3G43580, AT3G03000, AT1G54215, AT2G38544, AT3G02910, AT5G58850, AT1G49850, AT1G43650, AT2G12390, AT5G43010, AT2G32795, AT4G18960, AT5G63800, AT5G54215, AT5G18260, AT5G06280, AT3G07730, AT1G68190, AT5G26250, AT5G07020, AT3G14460, AT3G25495, AT4G28860, AT3G51490, AT1G54100, AT2G21410, AT1G50590, AT4G07470, AT5G11590, AT2G45660, AT1G43100, AT2G39975, AT4G39600, AT3G27920, AT1G65480, AT5G53260, AT2G20810, AT1G12060, AT3G29035, AT3G55140, AT1G52730, AT2G02990, AT2G05300, AT5G19740, AT3G13672, AT1G43110, AT1G77870, AT5G08510, AT1G73600, AT1G26310, AT1G35400, AT5G12250, AT4G39240, AT3G14230, AT5G23900, AT4G00550, AT3G25485, AT5G63634, AT2G21640, AT3G11130, AT2G35130, AT4G20270, AT1G24260, AT1G62800, AT4G19040, AT2G29900, AT5G16640, AT3G23070, AT1G60040, AT1G43080, AT4G38770, AT5G38760, AT1G53200, AT4G21213, AT4G32620, AT2G35260, AT1G73602, AT3G51500, AT3G51400, AT3G01890, AT4G35270, AT1G28640, AT2G05620, AT5G55140, AT1G05150, AT3G28917, AT5G14710, AT3G07820, AT5G56630, AT4G02590, AT5G62998, AT2G21150, AT5G08505, AT1G57980, AT1G10850, AT3G25727, AT5G26970, AT3G30360, AT1G43090, AT5G23750, AT5G07060, AT5G23413, AT1G73210, AT3G61220, AT5G10150, AT5G22510, AT5G58920, AT4G37705, AT3G30345, AT2G35250, AT1G01890, AT5G44650, AT5G05598, AT5G04900, AT2G25600, AT3G26480, AT2G42790, AT4G16670, AT3G23800, AT2G34540, AT4G30260, AT3G57880, AT1G77095, AT2G22941, AT1G78840, AT5G66880, AT2G23220, AT4G25910, AT5G06290, AT3G15090, AT5G61330, AT2G30140, AT5G39610, AT3G42850, AT1G23170, AT5G66870, AT2G34530, AT2G32110, AT2G44830

Protein-protein interaction network

The number of partners (degree) is: 17 (Top10%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

4 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Penta, control	Penta, Flg22 2 h	-1.52	1.60E-05
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.25	7.82E-10
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.93	8.92E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.59	1.29E-07