co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G22540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071000: response to magnetism	0.00E+00
2	GO:0032928: regulation of superoxide anion generation	0.00E+00
3	GO:0016576: histone dephosphorylation	0.00E+00
4	GO:0009249: protein lipoylation	0.00E+00
5	GO:0009583: detection of light stimulus	0.00E+00
6	GO:0007037: vacuolar phosphate transport	0.00E+00
7	GO:0009106: lipoate metabolic process	0.00E+00
8	GO:0048856: anatomical structure development	0.00E+00
9	GO:0010117: photoprotection	3.28E-05
10	GO:0072387: flavin adenine dinucleotide metabolic process	1.60E-04
11	GO:0031063: regulation of histone deacetylation	1.60E-04
12	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	3.65E-04
13	GO:1900871: chloroplast mRNA modification	3.65E-04
14	GO:0010617: circadian regulation of calcium ion oscillation	3.65E-04
15	GO:0050688: regulation of defense response to virus	3.65E-04
16	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	3.65E-04
17	GO:0099402: plant organ development	3.65E-04
18	GO:0035335: peptidyl-tyrosine dephosphorylation	3.65E-04
19	GO:0016122: xanthophyll metabolic process	3.65E-04
20	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.65E-04
21	GO:0010343: singlet oxygen-mediated programmed cell death	3.65E-04
22	GO:1901529: positive regulation of anion channel activity	3.65E-04
23	GO:0009451: RNA modification	3.85E-04
24	GO:0006760: folic acid-containing compound metabolic process	5.97E-04
25	GO:0045739: positive regulation of DNA repair	5.97E-04
26	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	5.97E-04
27	GO:1902448: positive regulation of shade avoidance	5.97E-04
28	GO:1901672: positive regulation of systemic acquired resistance	5.97E-04
29	GO:1901332: negative regulation of lateral root development	8.53E-04
30	GO:0046656: folic acid biosynthetic process	1.13E-03
31	GO:1902347: response to strigolactone	1.13E-03
32	GO:1900864: mitochondrial RNA modification	1.13E-03
33	GO:0042274: ribosomal small subunit biogenesis	1.13E-03
34	GO:0031935: regulation of chromatin silencing	1.13E-03
35	GO:0046283: anthocyanin-containing compound metabolic process	1.43E-03
36	GO:0045038: protein import into chloroplast thylakoid membrane	1.43E-03
37	GO:0009107: lipoate biosynthetic process	1.43E-03
38	GO:0010375: stomatal complex patterning	1.43E-03
39	GO:0009616: virus induced gene silencing	1.43E-03
40	GO:0006464: cellular protein modification process	1.74E-03
41	GO:0060918: auxin transport	1.76E-03
42	GO:0010190: cytochrome b6f complex assembly	1.76E-03
43	GO:0016070: RNA metabolic process	1.76E-03
44	GO:0031053: primary miRNA processing	1.76E-03
45	GO:0045962: positive regulation of development, heterochronic	1.76E-03
46	GO:1901371: regulation of leaf morphogenesis	1.76E-03
47	GO:0000741: karyogamy	1.76E-03
48	GO:0046654: tetrahydrofolate biosynthetic process	2.11E-03
49	GO:0010310: regulation of hydrogen peroxide metabolic process	2.11E-03
50	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.11E-03
51	GO:0051510: regulation of unidimensional cell growth	2.48E-03
52	GO:1900056: negative regulation of leaf senescence	2.48E-03
53	GO:0010050: vegetative phase change	2.48E-03
54	GO:0080111: DNA demethylation	2.48E-03
55	GO:0030091: protein repair	2.88E-03
56	GO:0009704: de-etiolation	2.88E-03
57	GO:0000105: histidine biosynthetic process	2.88E-03
58	GO:0045292: mRNA cis splicing, via spliceosome	2.88E-03
59	GO:0010928: regulation of auxin mediated signaling pathway	2.88E-03
60	GO:0022900: electron transport chain	3.29E-03
61	GO:1900426: positive regulation of defense response to bacterium	4.17E-03
62	GO:0009638: phototropism	4.17E-03
63	GO:1900865: chloroplast RNA modification	4.17E-03
64	GO:0010380: regulation of chlorophyll biosynthetic process	4.17E-03
65	GO:0010267: production of ta-siRNAs involved in RNA interference	4.17E-03
66	GO:0009688: abscisic acid biosynthetic process	4.64E-03
67	GO:0045036: protein targeting to chloroplast	4.64E-03
68	GO:0009644: response to high light intensity	4.72E-03
69	GO:0010075: regulation of meristem growth	6.14E-03
70	GO:0009767: photosynthetic electron transport chain	6.14E-03
71	GO:0009785: blue light signaling pathway	6.14E-03
72	GO:0010025: wax biosynthetic process	7.79E-03
73	GO:0000162: tryptophan biosynthetic process	7.79E-03
74	GO:0006289: nucleotide-excision repair	8.38E-03
75	GO:2000377: regulation of reactive oxygen species metabolic process	8.38E-03
76	GO:0032259: methylation	8.40E-03
77	GO:0007017: microtubule-based process	8.97E-03
78	GO:0006284: base-excision repair	1.15E-02
79	GO:0010118: stomatal movement	1.29E-02
80	GO:0009958: positive gravitropism	1.36E-02
81	GO:0010197: polar nucleus fusion	1.36E-02
82	GO:0006342: chromatin silencing	1.36E-02
83	GO:0042752: regulation of circadian rhythm	1.43E-02
84	GO:0009646: response to absence of light	1.43E-02
85	GO:0009851: auxin biosynthetic process	1.50E-02
86	GO:0080156: mitochondrial mRNA modification	1.58E-02
87	GO:0007264: small GTPase mediated signal transduction	1.65E-02
88	GO:0006470: protein dephosphorylation	1.66E-02
89	GO:0051607: defense response to virus	1.97E-02
90	GO:0016126: sterol biosynthetic process	2.05E-02
91	GO:0009658: chloroplast organization	2.25E-02
92	GO:0018298: protein-chromophore linkage	2.47E-02
93	GO:0010218: response to far red light	2.65E-02
94	GO:0048366: leaf development	2.65E-02
95	GO:0006811: ion transport	2.65E-02
96	GO:0007568: aging	2.74E-02
97	GO:0009910: negative regulation of flower development	2.74E-02
98	GO:0009637: response to blue light	2.93E-02
99	GO:0008283: cell proliferation	3.51E-02
100	GO:0010114: response to red light	3.51E-02
101	GO:0009640: photomorphogenesis	3.51E-02
102	GO:0055114: oxidation-reduction process	3.73E-02
103	GO:0009965: leaf morphogenesis	3.81E-02
104	GO:0006260: DNA replication	4.02E-02
105	GO:0006397: mRNA processing	4.28E-02
106	GO:0051603: proteolysis involved in cellular protein catabolic process	4.44E-02
107	GO:0006417: regulation of translation	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
2	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
3	GO:0017118: lipoyltransferase activity	1.25E-06
4	GO:0004848: ureidoglycolate hydrolase activity	4.66E-06
5	GO:0016491: oxidoreductase activity	1.35E-05
6	GO:0004424: imidazoleglycerol-phosphate dehydratase activity	1.60E-04
7	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.60E-04
8	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	1.60E-04
9	GO:0071949: FAD binding	1.80E-04
10	GO:0004150: dihydroneopterin aldolase activity	3.65E-04
11	GO:0016415: octanoyltransferase activity	3.65E-04
12	GO:0102083: 7,8-dihydromonapterin aldolase activity	3.65E-04
13	GO:0019003: GDP binding	5.97E-04
14	GO:0000339: RNA cap binding	8.53E-04
15	GO:0009882: blue light photoreceptor activity	8.53E-04
16	GO:0000254: C-4 methylsterol oxidase activity	8.53E-04
17	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.13E-03
18	GO:0004834: tryptophan synthase activity	1.13E-03
19	GO:0004518: nuclease activity	1.53E-03
20	GO:0004519: endonuclease activity	2.05E-03
21	GO:0004525: ribonuclease III activity	2.88E-03
22	GO:0008168: methyltransferase activity	3.92E-03
23	GO:0001055: RNA polymerase II activity	4.17E-03
24	GO:0001054: RNA polymerase I activity	5.12E-03
25	GO:0001056: RNA polymerase III activity	5.62E-03
26	GO:0031072: heat shock protein binding	6.14E-03
27	GO:0009982: pseudouridine synthase activity	6.14E-03
28	GO:0003723: RNA binding	7.27E-03
29	GO:0003887: DNA-directed DNA polymerase activity	7.79E-03
30	GO:0003713: transcription coactivator activity	1.36E-02
31	GO:0008080: N-acetyltransferase activity	1.36E-02
32	GO:0010181: FMN binding	1.43E-02
33	GO:0048038: quinone binding	1.58E-02
34	GO:0042802: identical protein binding	1.85E-02
35	GO:0050897: cobalt ion binding	2.74E-02
36	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.12E-02
37	GO:0051539: 4 iron, 4 sulfur cluster binding	3.21E-02
38	GO:0004185: serine-type carboxypeptidase activity	3.51E-02
39	GO:0051537: 2 iron, 2 sulfur cluster binding	3.71E-02
40	GO:0051287: NAD binding	4.02E-02
41	GO:0003924: GTPase activity	4.11E-02
42	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.34E-02
43	GO:0003777: microtubule motor activity	4.66E-02
44	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	5.68E-06
3	GO:0005845: mRNA cap binding complex	1.60E-04
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.80E-04
5	GO:0080085: signal recognition particle, chloroplast targeting	3.65E-04
6	GO:0005846: nuclear cap binding complex	3.65E-04
7	GO:0016605: PML body	5.97E-04
8	GO:0030286: dynein complex	1.13E-03
9	GO:0009517: PSII associated light-harvesting complex II	1.13E-03
10	GO:0009840: chloroplastic endopeptidase Clp complex	2.11E-03
11	GO:0005655: nucleolar ribonuclease P complex	2.11E-03
12	GO:0000123: histone acetyltransferase complex	2.48E-03
13	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.29E-03
14	GO:0046930: pore complex	3.29E-03
15	GO:0016604: nuclear body	4.17E-03
16	GO:0048471: perinuclear region of cytoplasm	5.12E-03
17	GO:0005875: microtubule associated complex	7.79E-03
18	GO:0000419: DNA-directed RNA polymerase V complex	7.79E-03
19	GO:0042651: thylakoid membrane	8.97E-03
20	GO:0015935: small ribosomal subunit	9.59E-03
21	GO:0043231: intracellular membrane-bounded organelle	1.00E-02
22	GO:0005623: cell	1.08E-02
23	GO:0000790: nuclear chromatin	1.22E-02
24	GO:0000786: nucleosome	2.84E-02
25	GO:0005819: spindle	3.12E-02
26	GO:0031966: mitochondrial membrane	4.12E-02
27	GO:0009535: chloroplast thylakoid membrane	4.13E-02