Gene: AT5G07060
     

Gene description


TAIR ID: AT5G07060

Short description: CCCH-type zinc fingerfamily protein with RNA-binding domain

Pathogen responsiveness: -1.82

General responsiveness: -3.32

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


spliceosomal snRNP assembly


GO cellular component


Prp19 complex, nucleus, U2-type catalytic step 1 spliceosome, U2-type catalytic step 2 spliceosome


GO molecular function


metal ion binding, nucleic acid binding, pre-mRNA binding, U6 snRNA binding, DNA binding


Protein domain


PfamPF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMARTSM00356, ZnF_C3H1

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT4G18770, AT4G24540, AT2G45660, AT2G22540

Target:
none

Protein-protein interaction network


No Interactor


Coexpression network

GSE56094_WT_HRPA-  view

Differentially expressed condition


6 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h2.731.17E-03
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h2.761.03E-03
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h2.041.18E-02
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h2.865.53E-04
GSE26679Col, edr1, GC 0 hCol, edr1, GC 96 h2.781.70E-03
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.611.75E-02






Copyright © 2017 Ziding Zhang's Lab - China Agricultural University. All Rights Reserved.