gene detail

Gene description

TAIR ID: AT4G25910

Short description: NFU domain protein 3

Pathogen responsiveness: 0.11

General responsiveness: 1.03

Orthologous

Rice:

OS06G0694500

Maize:

GRMZM2G100976

Wheat:

TAAFFX.38817.1.S1_AT

GO biological process

iron-sulfur cluster assembly, photosystem I assembly, protein complex scaffold activity, chloroplast organization

GO cellular component

chloroplast stroma, chloroplast

GO molecular function

iron ion binding, iron-sulfur cluster binding, structural molecule activity

Protein domain

Pfam	PF01106, NifU-like domain

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G24050, AT4G34680, AT2G45050, AT4G24540, AT2G45660, AT3G60530, AT4G36990, AT2G22540

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

26 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	-1.85	4.53E-08
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	-1.77	4.64E-08
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 2 h	-1.68	1.29E-03
GSE17464	Laer, control	Laer, Flg22 1 h	-1.67	4.43E-04
GSE17464	Laer, control	Laer, Flg22 2 h	-1.73	2.83E-04
GSE17464	Penta, control	Penta, Flg22 2 h	-1.68	3.86E-04
GSE17464	Penta, control	Penta, Flg22 2 h	-1.85	1.12E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.65	1.28E-08
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.54	4.77E-07
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.55	2.10E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.52	2.49E-08
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.73	8.73E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.86	1.64E-11
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-2.19	1.06E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.72	3.02E-08
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.96	4.83E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.91	1.25E-11
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.41	5.32E-13
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-1.60	2.53E-11
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.84	5.52E-04
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.68	1.82E-04
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-1.89	4.39E-12
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	-1.58	6.22E-09
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.53	1.01E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	-1.59	5.70E-03
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	-1.72	4.24E-03