gene detail

Gene description

TAIR ID: AT5G04900

Short description: NYC1-like

Pathogen responsiveness: -0.92

General responsiveness: 0.99

Orthologous

Rice: No orthologous gene

Maize:

Wheat: No orthologous gene

GO biological process

PSII associated light-harvesting complex II catabolic process, chlorophyll catabolic process, oxidation-reduction process

GO cellular component

chloroplast thylakoid membrane, chloroplast

GO molecular function

oxidoreductase activity, chlorophyll(ide) b reductase activity

Protein domain

Pfam	PF00106, short chain dehydrogenase

Metabolic pathway

PWY-5068: chlorophyll cycle

KEGG pathway

PATH:ath00860: Porphyrin and chlorophyll metabolism

Transcriptional regulation

Regulator:
AT5G11260, AT4G24540, AT2G45660, AT2G22540

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 7

Coexpression network

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.76	2.04E-03
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-3.18	1.87E-07
GSE5520	Col, WT, control 10 h	Col, WT, Cor- hrpS- 10 h	-1.61	8.66E-03
GSE5520	Col, WT, control 24 h	Col, WT, PsDC3118 Cor- 24 h	-1.62	2.92E-03
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	-1.79	5.85E-04
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.80	1.99E-05