co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G59060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071211: protein targeting to vacuole involved in autophagy	0.00E+00
2	GO:0030644: cellular chloride ion homeostasis	0.00E+00
3	GO:0010219: regulation of vernalization response	0.00E+00
4	GO:0046459: short-chain fatty acid metabolic process	0.00E+00
5	GO:1904962: plastid to vacuole vesicle-mediated transport	0.00E+00
6	GO:0042906: xanthine transport	0.00E+00
7	GO:0051603: proteolysis involved in cellular protein catabolic process	5.07E-05
8	GO:0010286: heat acclimation	1.11E-04
9	GO:0032958: inositol phosphate biosynthetic process	1.31E-04
10	GO:0006369: termination of RNA polymerase II transcription	1.31E-04
11	GO:1900060: negative regulation of ceramide biosynthetic process	1.31E-04
12	GO:1990641: response to iron ion starvation	1.31E-04
13	GO:0010362: negative regulation of anion channel activity by blue light	1.31E-04
14	GO:1902265: abscisic acid homeostasis	1.31E-04
15	GO:0009641: shade avoidance	1.92E-04
16	GO:0009817: defense response to fungus, incompatible interaction	1.92E-04
17	GO:0000160: phosphorelay signal transduction system	2.06E-04
18	GO:0007623: circadian rhythm	2.38E-04
19	GO:0015857: uracil transport	3.03E-04
20	GO:1902884: positive regulation of response to oxidative stress	3.03E-04
21	GO:0006101: citrate metabolic process	3.03E-04
22	GO:0080171: lytic vacuole organization	3.03E-04
23	GO:0090156: cellular sphingolipid homeostasis	3.03E-04
24	GO:0015720: allantoin transport	3.03E-04
25	GO:0010155: regulation of proton transport	3.03E-04
26	GO:0006883: cellular sodium ion homeostasis	3.03E-04
27	GO:0048833: specification of floral organ number	3.03E-04
28	GO:0051170: nuclear import	3.03E-04
29	GO:0009640: photomorphogenesis	3.72E-04
30	GO:0034976: response to endoplasmic reticulum stress	4.19E-04
31	GO:0042344: indole glucosinolate catabolic process	4.99E-04
32	GO:0006954: inflammatory response	4.99E-04
33	GO:1901562: response to paraquat	4.99E-04
34	GO:0030029: actin filament-based process	4.99E-04
35	GO:1902448: positive regulation of shade avoidance	4.99E-04
36	GO:0071705: nitrogen compound transport	4.99E-04
37	GO:0048511: rhythmic process	5.61E-04
38	GO:0010017: red or far-red light signaling pathway	6.13E-04
39	GO:0035556: intracellular signal transduction	6.61E-04
40	GO:1901332: negative regulation of lateral root development	7.14E-04
41	GO:0006624: vacuolar protein processing	7.14E-04
42	GO:0006020: inositol metabolic process	7.14E-04
43	GO:0015749: monosaccharide transport	7.14E-04
44	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	7.82E-04
45	GO:0009687: abscisic acid metabolic process	9.47E-04
46	GO:0048442: sepal development	9.47E-04
47	GO:0010600: regulation of auxin biosynthetic process	9.47E-04
48	GO:1901002: positive regulation of response to salt stress	9.47E-04
49	GO:0009904: chloroplast accumulation movement	1.20E-03
50	GO:0042732: D-xylose metabolic process	1.47E-03
51	GO:0000741: karyogamy	1.47E-03
52	GO:0009651: response to salt stress	1.67E-03
53	GO:0010029: regulation of seed germination	1.67E-03
54	GO:0009903: chloroplast avoidance movement	1.76E-03
55	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.76E-03
56	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.76E-03
57	GO:0048573: photoperiodism, flowering	1.85E-03
58	GO:0009414: response to water deprivation	1.97E-03
59	GO:0010044: response to aluminum ion	2.06E-03
60	GO:0010161: red light signaling pathway	2.06E-03
61	GO:0009704: de-etiolation	2.39E-03
62	GO:0006102: isocitrate metabolic process	2.39E-03
63	GO:0009061: anaerobic respiration	2.39E-03
64	GO:0010928: regulation of auxin mediated signaling pathway	2.39E-03
65	GO:0009819: drought recovery	2.39E-03
66	GO:0010099: regulation of photomorphogenesis	2.73E-03
67	GO:0009827: plant-type cell wall modification	2.73E-03
68	GO:0009416: response to light stimulus	2.83E-03
69	GO:0046916: cellular transition metal ion homeostasis	3.08E-03
70	GO:0006098: pentose-phosphate shunt	3.08E-03
71	GO:0006970: response to osmotic stress	3.18E-03
72	GO:0009638: phototropism	3.46E-03
73	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.46E-03
74	GO:0048441: petal development	3.84E-03
75	GO:0055062: phosphate ion homeostasis	3.84E-03
76	GO:0000165: MAPK cascade	4.02E-03
77	GO:0006457: protein folding	4.19E-03
78	GO:0030148: sphingolipid biosynthetic process	4.24E-03
79	GO:0009682: induced systemic resistance	4.24E-03
80	GO:0052544: defense response by callose deposition in cell wall	4.24E-03
81	GO:0045892: negative regulation of transcription, DNA-templated	4.88E-03
82	GO:0050826: response to freezing	5.08E-03
83	GO:0009718: anthocyanin-containing compound biosynthetic process	5.08E-03
84	GO:0009785: blue light signaling pathway	5.08E-03
85	GO:0006807: nitrogen compound metabolic process	5.08E-03
86	GO:0009266: response to temperature stimulus	5.52E-03
87	GO:0048440: carpel development	5.52E-03
88	GO:0019853: L-ascorbic acid biosynthetic process	5.97E-03
89	GO:0090351: seedling development	5.97E-03
90	GO:0010030: positive regulation of seed germination	5.97E-03
91	GO:0007165: signal transduction	7.43E-03
92	GO:0051260: protein homooligomerization	7.91E-03
93	GO:0010431: seed maturation	7.91E-03
94	GO:0009269: response to desiccation	7.91E-03
95	GO:0042742: defense response to bacterium	8.26E-03
96	GO:0019748: secondary metabolic process	8.42E-03
97	GO:0006012: galactose metabolic process	8.95E-03
98	GO:0071215: cellular response to abscisic acid stimulus	8.95E-03
99	GO:0048443: stamen development	9.49E-03
100	GO:0042631: cellular response to water deprivation	1.06E-02
101	GO:0010150: leaf senescence	1.10E-02
102	GO:0006520: cellular amino acid metabolic process	1.12E-02
103	GO:0010197: polar nucleus fusion	1.12E-02
104	GO:0046323: glucose import	1.12E-02
105	GO:0048544: recognition of pollen	1.18E-02
106	GO:0006814: sodium ion transport	1.18E-02
107	GO:0009646: response to absence of light	1.18E-02
108	GO:0009739: response to gibberellin	1.23E-02
109	GO:0009738: abscisic acid-activated signaling pathway	1.24E-02
110	GO:0006635: fatty acid beta-oxidation	1.30E-02
111	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.30E-02
112	GO:0009617: response to bacterium	1.31E-02
113	GO:0010468: regulation of gene expression	1.31E-02
114	GO:0019760: glucosinolate metabolic process	1.49E-02
115	GO:0015995: chlorophyll biosynthetic process	1.89E-02
116	GO:0018298: protein-chromophore linkage	2.03E-02
117	GO:0009813: flavonoid biosynthetic process	2.11E-02
118	GO:0080167: response to karrikin	2.12E-02
119	GO:0010218: response to far red light	2.18E-02
120	GO:0010119: regulation of stomatal movement	2.25E-02
121	GO:0044550: secondary metabolite biosynthetic process	2.30E-02
122	GO:0009637: response to blue light	2.41E-02
123	GO:0006099: tricarboxylic acid cycle	2.48E-02
124	GO:0009737: response to abscisic acid	2.57E-02
125	GO:0030001: metal ion transport	2.64E-02
126	GO:0042542: response to hydrogen peroxide	2.80E-02
127	GO:0010114: response to red light	2.88E-02
128	GO:0051707: response to other organism	2.88E-02
129	GO:0009644: response to high light intensity	3.05E-02
130	GO:0008643: carbohydrate transport	3.05E-02
131	GO:0009408: response to heat	3.12E-02
132	GO:0042538: hyperosmotic salinity response	3.39E-02
133	GO:0009585: red, far-red light phototransduction	3.56E-02
134	GO:0006813: potassium ion transport	3.56E-02
135	GO:0006355: regulation of transcription, DNA-templated	3.58E-02
136	GO:0006857: oligopeptide transport	3.74E-02
137	GO:0009909: regulation of flower development	3.83E-02
138	GO:0006508: proteolysis	4.37E-02
139	GO:0009624: response to nematode	4.58E-02
140	GO:0006396: RNA processing	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
2	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
3	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
4	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
5	GO:0009045: xylose isomerase activity	0.00E+00
6	GO:0004197: cysteine-type endopeptidase activity	8.41E-05
7	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.31E-04
8	GO:0009679: hexose:proton symporter activity	1.31E-04
9	GO:0000829: inositol heptakisphosphate kinase activity	1.31E-04
10	GO:0046870: cadmium ion binding	1.31E-04
11	GO:0000828: inositol hexakisphosphate kinase activity	1.31E-04
12	GO:0000989: transcription factor activity, transcription factor binding	1.34E-04
13	GO:0004353: glutamate dehydrogenase [NAD(P)+] activity	3.03E-04
14	GO:0032791: lead ion binding	3.03E-04
15	GO:0005274: allantoin uptake transmembrane transporter activity	3.03E-04
16	GO:0003994: aconitate hydratase activity	3.03E-04
17	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	3.03E-04
18	GO:0004352: glutamate dehydrogenase (NAD+) activity	3.03E-04
19	GO:0017150: tRNA dihydrouridine synthase activity	4.99E-04
20	GO:0004707: MAP kinase activity	5.61E-04
21	GO:0009882: blue light photoreceptor activity	7.14E-04
22	GO:0048027: mRNA 5'-UTR binding	7.14E-04
23	GO:0003995: acyl-CoA dehydrogenase activity	9.47E-04
24	GO:0015210: uracil transmembrane transporter activity	9.47E-04
25	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.20E-03
26	GO:0003997: acyl-CoA oxidase activity	1.20E-03
27	GO:0010294: abscisic acid glucosyltransferase activity	1.20E-03
28	GO:0015145: monosaccharide transmembrane transporter activity	1.20E-03
29	GO:0000156: phosphorelay response regulator activity	1.25E-03
30	GO:0019137: thioglucosidase activity	1.47E-03
31	GO:0005351: sugar:proton symporter activity	1.62E-03
32	GO:0008270: zinc ion binding	2.00E-03
33	GO:0050897: cobalt ion binding	2.37E-03
34	GO:0004525: ribonuclease III activity	2.39E-03
35	GO:0004033: aldo-keto reductase (NADP) activity	2.39E-03
36	GO:0001104: RNA polymerase II transcription cofactor activity	2.73E-03
37	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.08E-03
38	GO:0016301: kinase activity	3.71E-03
39	GO:0004672: protein kinase activity	4.04E-03
40	GO:0008234: cysteine-type peptidase activity	4.95E-03
41	GO:0005315: inorganic phosphate transmembrane transporter activity	5.08E-03
42	GO:0000155: phosphorelay sensor kinase activity	5.08E-03
43	GO:0004565: beta-galactosidase activity	5.08E-03
44	GO:0004175: endopeptidase activity	5.52E-03
45	GO:0003712: transcription cofactor activity	5.97E-03
46	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.17E-03
47	GO:0008514: organic anion transmembrane transporter activity	9.49E-03
48	GO:0003756: protein disulfide isomerase activity	9.49E-03
49	GO:0015144: carbohydrate transmembrane transporter activity	9.52E-03
50	GO:0005249: voltage-gated potassium channel activity	1.06E-02
51	GO:0010181: FMN binding	1.18E-02
52	GO:0005200: structural constituent of cytoskeleton	1.55E-02
53	GO:0102483: scopolin beta-glucosidase activity	1.89E-02
54	GO:0030247: polysaccharide binding	1.89E-02
55	GO:0050660: flavin adenine dinucleotide binding	1.97E-02
56	GO:0005507: copper ion binding	2.02E-02
57	GO:0004497: monooxygenase activity	2.12E-02
58	GO:0005515: protein binding	2.41E-02
59	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.41E-02
60	GO:0008422: beta-glucosidase activity	2.56E-02
61	GO:0051539: 4 iron, 4 sulfur cluster binding	2.64E-02
62	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.74E-02
63	GO:0004185: serine-type carboxypeptidase activity	2.88E-02
64	GO:0015293: symporter activity	3.13E-02
65	GO:0004674: protein serine/threonine kinase activity	3.23E-02
66	GO:0043565: sequence-specific DNA binding	3.44E-02
67	GO:0005215: transporter activity	3.56E-02
68	GO:0031625: ubiquitin protein ligase binding	3.83E-02
69	GO:0045735: nutrient reservoir activity	4.01E-02
70	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.11E-02
71	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.29E-02
72	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.29E-02
73	GO:0016874: ligase activity	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0000323: lytic vacuole	7.65E-06
2	GO:0009898: cytoplasmic side of plasma membrane	1.44E-05
3	GO:0035339: SPOTS complex	1.31E-04
4	GO:0005764: lysosome	3.34E-04
5	GO:0005773: vacuole	4.81E-04
6	GO:0008076: voltage-gated potassium channel complex	7.14E-04
7	GO:0032586: protein storage vacuole membrane	9.47E-04
8	GO:0070847: core mediator complex	1.47E-03
9	GO:0005851: eukaryotic translation initiation factor 2B complex	1.47E-03
10	GO:0009986: cell surface	2.06E-03
11	GO:0000326: protein storage vacuole	2.73E-03
12	GO:0009514: glyoxysome	2.73E-03
13	GO:0005783: endoplasmic reticulum	2.88E-03
14	GO:0005777: peroxisome	3.49E-03
15	GO:0005623: cell	8.17E-03
16	GO:0016021: integral component of membrane	9.02E-03
17	GO:0005886: plasma membrane	1.16E-02
18	GO:0005615: extracellular space	1.23E-02
19	GO:0031965: nuclear membrane	1.24E-02
20	GO:0016592: mediator complex	1.36E-02
21	GO:0031969: chloroplast membrane	2.12E-02
22	GO:0005622: intracellular	2.67E-02
23	GO:0005634: nucleus	3.11E-02
24	GO:0043231: intracellular membrane-bounded organelle	3.44E-02
25	GO:0016607: nuclear speck	4.11E-02
26	GO:0010008: endosome membrane	4.11E-02