Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G59060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
2GO:0009768: photosynthesis, light harvesting in photosystem I3.41E-09
3GO:0009645: response to low light intensity stimulus1.58E-08
4GO:0018298: protein-chromophore linkage1.03E-07
5GO:0009644: response to high light intensity3.79E-07
6GO:0010218: response to far red light9.47E-06
7GO:0010114: response to red light1.83E-05
8GO:1990641: response to iron ion starvation2.76E-05
9GO:0015812: gamma-aminobutyric acid transport2.76E-05
10GO:0009718: anthocyanin-containing compound biosynthetic process3.08E-05
11GO:0006101: citrate metabolic process7.01E-05
12GO:0010017: red or far-red light signaling pathway7.33E-05
13GO:0009416: response to light stimulus1.10E-04
14GO:1902448: positive regulation of shade avoidance1.23E-04
15GO:0010600: regulation of auxin biosynthetic process2.48E-04
16GO:0030104: water homeostasis2.48E-04
17GO:0010023: proanthocyanidin biosynthetic process2.48E-04
18GO:0009765: photosynthesis, light harvesting2.48E-04
19GO:0015979: photosynthesis3.41E-04
20GO:0009637: response to blue light3.60E-04
21GO:0009651: response to salt stress4.41E-04
22GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.69E-04
23GO:0009769: photosynthesis, light harvesting in photosystem II5.49E-04
24GO:0010161: red light signaling pathway5.49E-04
25GO:0010928: regulation of auxin mediated signaling pathway6.32E-04
26GO:0009704: de-etiolation6.32E-04
27GO:0006102: isocitrate metabolic process6.32E-04
28GO:0009827: plant-type cell wall modification7.18E-04
29GO:0010099: regulation of photomorphogenesis7.18E-04
30GO:0090333: regulation of stomatal closure8.07E-04
31GO:0048354: mucilage biosynthetic process involved in seed coat development8.99E-04
32GO:0055062: phosphate ion homeostasis9.92E-04
33GO:0009641: shade avoidance9.92E-04
34GO:0009737: response to abscisic acid1.12E-03
35GO:0018107: peptidyl-threonine phosphorylation1.29E-03
36GO:0009266: response to temperature stimulus1.40E-03
37GO:0090351: seedling development1.50E-03
38GO:0009269: response to desiccation1.97E-03
39GO:0003333: amino acid transmembrane transport1.97E-03
40GO:0048511: rhythmic process1.97E-03
41GO:0071215: cellular response to abscisic acid stimulus2.22E-03
42GO:0010089: xylem development2.35E-03
43GO:0080167: response to karrikin2.74E-03
44GO:0006814: sodium ion transport2.88E-03
45GO:0044550: secondary metabolite biosynthetic process2.98E-03
46GO:0000302: response to reactive oxygen species3.16E-03
47GO:0016032: viral process3.31E-03
48GO:0045892: negative regulation of transcription, DNA-templated3.32E-03
49GO:0009409: response to cold3.41E-03
50GO:0009753: response to jasmonic acid4.32E-03
51GO:0015995: chlorophyll biosynthetic process4.54E-03
52GO:0048573: photoperiodism, flowering4.54E-03
53GO:0000160: phosphorelay signal transduction system5.04E-03
54GO:0006099: tricarboxylic acid cycle5.91E-03
55GO:0042542: response to hydrogen peroxide6.64E-03
56GO:0009640: photomorphogenesis6.82E-03
57GO:0008643: carbohydrate transport7.20E-03
58GO:0035556: intracellular signal transduction7.51E-03
59GO:0009585: red, far-red light phototransduction8.40E-03
60GO:0006857: oligopeptide transport8.81E-03
61GO:0009909: regulation of flower development9.01E-03
62GO:0055085: transmembrane transport9.04E-03
63GO:0006457: protein folding9.22E-03
64GO:0009624: response to nematode1.07E-02
65GO:0018105: peptidyl-serine phosphorylation1.10E-02
66GO:0007623: circadian rhythm1.58E-02
67GO:0010150: leaf senescence1.58E-02
68GO:0010228: vegetative to reproductive phase transition of meristem1.63E-02
69GO:0009739: response to gibberellin1.71E-02
70GO:0010468: regulation of gene expression1.79E-02
71GO:0006355: regulation of transcription, DNA-templated1.79E-02
72GO:0055114: oxidation-reduction process2.08E-02
73GO:0006351: transcription, DNA-templated2.13E-02
74GO:0009658: chloroplast organization2.16E-02
75GO:0009723: response to ethylene2.39E-02
76GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.58E-02
77GO:0009751: response to salicylic acid3.29E-02
78GO:0006629: lipid metabolic process3.32E-02
79GO:0008152: metabolic process3.56E-02
80GO:0009735: response to cytokinin4.68E-02
RankGO TermAdjusted P value
1GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
2GO:0031409: pigment binding2.08E-09
3GO:0016168: chlorophyll binding6.30E-08
4GO:0015185: gamma-aminobutyric acid transmembrane transporter activity2.76E-05
5GO:0015180: L-alanine transmembrane transporter activity7.01E-05
6GO:0003994: aconitate hydratase activity7.01E-05
7GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen7.54E-05
8GO:0048027: mRNA 5'-UTR binding1.83E-04
9GO:0015181: arginine transmembrane transporter activity1.83E-04
10GO:0015189: L-lysine transmembrane transporter activity1.83E-04
11GO:0005313: L-glutamate transmembrane transporter activity2.48E-04
12GO:0004497: monooxygenase activity2.86E-04
13GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen3.18E-04
14GO:0000989: transcription factor activity, transcription factor binding8.07E-04
15GO:0047372: acylglycerol lipase activity1.09E-03
16GO:0004565: beta-galactosidase activity1.29E-03
17GO:0004022: alcohol dehydrogenase (NAD) activity1.29E-03
18GO:0005315: inorganic phosphate transmembrane transporter activity1.29E-03
19GO:0005351: sugar:proton symporter activity1.42E-03
20GO:0019825: oxygen binding1.49E-03
21GO:0003712: transcription cofactor activity1.50E-03
22GO:0004707: MAP kinase activity1.97E-03
23GO:0005506: iron ion binding2.28E-03
24GO:0008514: organic anion transmembrane transporter activity2.35E-03
25GO:0000156: phosphorelay response regulator activity3.45E-03
26GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.53E-03
27GO:0020037: heme binding4.14E-03
28GO:0008270: zinc ion binding4.58E-03
29GO:0051539: 4 iron, 4 sulfur cluster binding6.27E-03
30GO:0015293: symporter activity7.40E-03
31GO:0015171: amino acid transmembrane transporter activity9.01E-03
32GO:0015144: carbohydrate transmembrane transporter activity1.43E-02
33GO:0015297: antiporter activity1.53E-02
34GO:0005215: transporter activity1.60E-02
35GO:0003700: transcription factor activity, sequence-specific DNA binding2.03E-02
36GO:0046872: metal ion binding2.81E-02
37GO:0016787: hydrolase activity3.10E-02
38GO:0003924: GTPase activity3.32E-02
39GO:0004519: endonuclease activity3.52E-02
RankGO TermAdjusted P value
1GO:0009522: photosystem I1.68E-08
2GO:0010287: plastoglobule3.62E-08
3GO:0030076: light-harvesting complex3.42E-07
4GO:0009523: photosystem II2.33E-06
5GO:0009579: thylakoid1.09E-05
6GO:0016021: integral component of membrane7.51E-05
7GO:0009534: chloroplast thylakoid1.52E-04
8GO:0009535: chloroplast thylakoid membrane2.07E-04
9GO:0009517: PSII associated light-harvesting complex II2.48E-04
10GO:0016020: membrane7.09E-04
11GO:0009941: chloroplast envelope3.71E-03
12GO:0031966: mitochondrial membrane7.99E-03
13GO:0016607: nuclear speck9.65E-03
14GO:0005774: vacuolar membrane1.12E-02
15GO:0009507: chloroplast3.45E-02
16GO:0005887: integral component of plasma membrane4.13E-02
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Gene type



Gene DE type