GO Enrichment Analysis of Co-expressed Genes with
AT3G59060
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015717: triose phosphate transport | 0.00E+00 |
| 2 | GO:0016118: carotenoid catabolic process | 0.00E+00 |
| 3 | GO:0015979: photosynthesis | 1.25E-12 |
| 4 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.05E-08 |
| 5 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.05E-07 |
| 6 | GO:0018298: protein-chromophore linkage | 3.10E-07 |
| 7 | GO:0009773: photosynthetic electron transport in photosystem I | 3.18E-07 |
| 8 | GO:0006000: fructose metabolic process | 4.06E-07 |
| 9 | GO:0006094: gluconeogenesis | 5.25E-07 |
| 10 | GO:0010207: photosystem II assembly | 6.60E-07 |
| 11 | GO:0042549: photosystem II stabilization | 5.05E-06 |
| 12 | GO:0010196: nonphotochemical quenching | 1.02E-05 |
| 13 | GO:0006002: fructose 6-phosphate metabolic process | 1.76E-05 |
| 14 | GO:0080093: regulation of photorespiration | 4.04E-05 |
| 15 | GO:0031998: regulation of fatty acid beta-oxidation | 4.04E-05 |
| 16 | GO:0005986: sucrose biosynthetic process | 5.43E-05 |
| 17 | GO:0035304: regulation of protein dephosphorylation | 1.00E-04 |
| 18 | GO:0016124: xanthophyll catabolic process | 1.00E-04 |
| 19 | GO:0016121: carotene catabolic process | 1.00E-04 |
| 20 | GO:0035436: triose phosphate transmembrane transport | 1.73E-04 |
| 21 | GO:1902448: positive regulation of shade avoidance | 1.73E-04 |
| 22 | GO:0010021: amylopectin biosynthetic process | 3.43E-04 |
| 23 | GO:0009765: photosynthesis, light harvesting | 3.43E-04 |
| 24 | GO:0015713: phosphoglycerate transport | 3.43E-04 |
| 25 | GO:0006097: glyoxylate cycle | 4.37E-04 |
| 26 | GO:0010218: response to far red light | 5.04E-04 |
| 27 | GO:0009643: photosynthetic acclimation | 5.37E-04 |
| 28 | GO:0009635: response to herbicide | 5.37E-04 |
| 29 | GO:0009637: response to blue light | 5.76E-04 |
| 30 | GO:0009955: adaxial/abaxial pattern specification | 6.40E-04 |
| 31 | GO:1901259: chloroplast rRNA processing | 6.40E-04 |
| 32 | GO:0010114: response to red light | 7.35E-04 |
| 33 | GO:0009645: response to low light intensity stimulus | 7.49E-04 |
| 34 | GO:0009769: photosynthesis, light harvesting in photosystem II | 7.49E-04 |
| 35 | GO:0009644: response to high light intensity | 7.93E-04 |
| 36 | GO:0032544: plastid translation | 9.77E-04 |
| 37 | GO:0010206: photosystem II repair | 1.10E-03 |
| 38 | GO:0006098: pentose-phosphate shunt | 1.10E-03 |
| 39 | GO:0005982: starch metabolic process | 1.22E-03 |
| 40 | GO:0010205: photoinhibition | 1.22E-03 |
| 41 | GO:0048829: root cap development | 1.35E-03 |
| 42 | GO:0031627: telomeric loop formation | 1.35E-03 |
| 43 | GO:0019684: photosynthesis, light reaction | 1.49E-03 |
| 44 | GO:0009750: response to fructose | 1.49E-03 |
| 45 | GO:0009735: response to cytokinin | 1.58E-03 |
| 46 | GO:0005983: starch catabolic process | 1.63E-03 |
| 47 | GO:0045037: protein import into chloroplast stroma | 1.63E-03 |
| 48 | GO:0010628: positive regulation of gene expression | 1.77E-03 |
| 49 | GO:0006108: malate metabolic process | 1.77E-03 |
| 50 | GO:0009266: response to temperature stimulus | 1.92E-03 |
| 51 | GO:0019253: reductive pentose-phosphate cycle | 1.92E-03 |
| 52 | GO:0090351: seedling development | 2.07E-03 |
| 53 | GO:0005985: sucrose metabolic process | 2.07E-03 |
| 54 | GO:0007623: circadian rhythm | 2.32E-03 |
| 55 | GO:0009737: response to abscisic acid | 2.36E-03 |
| 56 | GO:0048511: rhythmic process | 2.72E-03 |
| 57 | GO:0010017: red or far-red light signaling pathway | 2.89E-03 |
| 58 | GO:0042254: ribosome biogenesis | 3.64E-03 |
| 59 | GO:0006814: sodium ion transport | 3.99E-03 |
| 60 | GO:0019252: starch biosynthetic process | 4.19E-03 |
| 61 | GO:0000302: response to reactive oxygen species | 4.38E-03 |
| 62 | GO:0080167: response to karrikin | 4.42E-03 |
| 63 | GO:0048573: photoperiodism, flowering | 6.31E-03 |
| 64 | GO:0009409: response to cold | 6.32E-03 |
| 65 | GO:0016311: dephosphorylation | 6.54E-03 |
| 66 | GO:0000160: phosphorelay signal transduction system | 7.01E-03 |
| 67 | GO:0009407: toxin catabolic process | 7.25E-03 |
| 68 | GO:0009834: plant-type secondary cell wall biogenesis | 7.25E-03 |
| 69 | GO:0010119: regulation of stomatal movement | 7.49E-03 |
| 70 | GO:0034599: cellular response to oxidative stress | 8.24E-03 |
| 71 | GO:0006099: tricarboxylic acid cycle | 8.24E-03 |
| 72 | GO:0009640: photomorphogenesis | 9.53E-03 |
| 73 | GO:0009636: response to toxic substance | 1.03E-02 |
| 74 | GO:0009416: response to light stimulus | 1.16E-02 |
| 75 | GO:0006096: glycolytic process | 1.32E-02 |
| 76 | GO:0009624: response to nematode | 1.51E-02 |
| 77 | GO:0042744: hydrogen peroxide catabolic process | 1.94E-02 |
| 78 | GO:0010228: vegetative to reproductive phase transition of meristem | 2.30E-02 |
| 79 | GO:0006412: translation | 3.46E-02 |
| 80 | GO:0046686: response to cadmium ion | 3.65E-02 |
| 81 | GO:0045892: negative regulation of transcription, DNA-templated | 4.07E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030504: inorganic diphosphate transmembrane transporter activity | 0.00E+00 |
| 2 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 3 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 4 | GO:0031409: pigment binding | 6.40E-09 |
| 5 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.05E-07 |
| 6 | GO:0016168: chlorophyll binding | 1.91E-07 |
| 7 | GO:0010242: oxygen evolving activity | 4.04E-05 |
| 8 | GO:0033201: alpha-1,4-glucan synthase activity | 1.00E-04 |
| 9 | GO:0008967: phosphoglycolate phosphatase activity | 1.00E-04 |
| 10 | GO:0071917: triose-phosphate transmembrane transporter activity | 1.73E-04 |
| 11 | GO:0004373: glycogen (starch) synthase activity | 1.73E-04 |
| 12 | GO:0009011: starch synthase activity | 3.43E-04 |
| 13 | GO:0015120: phosphoglycerate transmembrane transporter activity | 3.43E-04 |
| 14 | GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity | 4.37E-04 |
| 15 | GO:0016615: malate dehydrogenase activity | 5.37E-04 |
| 16 | GO:2001070: starch binding | 5.37E-04 |
| 17 | GO:0004332: fructose-bisphosphate aldolase activity | 5.37E-04 |
| 18 | GO:0004130: cytochrome-c peroxidase activity | 5.37E-04 |
| 19 | GO:0030060: L-malate dehydrogenase activity | 6.40E-04 |
| 20 | GO:0071949: FAD binding | 1.10E-03 |
| 21 | GO:0003691: double-stranded telomeric DNA binding | 1.49E-03 |
| 22 | GO:0019843: rRNA binding | 1.70E-03 |
| 23 | GO:0005315: inorganic phosphate transmembrane transporter activity | 1.77E-03 |
| 24 | GO:0031072: heat shock protein binding | 1.77E-03 |
| 25 | GO:0008266: poly(U) RNA binding | 1.92E-03 |
| 26 | GO:0003712: transcription cofactor activity | 2.07E-03 |
| 27 | GO:0005515: protein binding | 2.88E-03 |
| 28 | GO:0046872: metal ion binding | 3.09E-03 |
| 29 | GO:0003756: protein disulfide isomerase activity | 3.24E-03 |
| 30 | GO:0008514: organic anion transmembrane transporter activity | 3.24E-03 |
| 31 | GO:0000156: phosphorelay response regulator activity | 4.79E-03 |
| 32 | GO:0004364: glutathione transferase activity | 9.27E-03 |
| 33 | GO:0015293: symporter activity | 1.03E-02 |
| 34 | GO:0003735: structural constituent of ribosome | 1.03E-02 |
| 35 | GO:0005198: structural molecule activity | 1.03E-02 |
| 36 | GO:0051082: unfolded protein binding | 1.51E-02 |
| 37 | GO:0015144: carbohydrate transmembrane transporter activity | 2.01E-02 |
| 38 | GO:0008565: protein transporter activity | 2.01E-02 |
| 39 | GO:0015297: antiporter activity | 2.15E-02 |
| 40 | GO:0005351: sugar:proton symporter activity | 2.19E-02 |
| 41 | GO:0003743: translation initiation factor activity | 2.48E-02 |
| 42 | GO:0042802: identical protein binding | 2.64E-02 |
| 43 | GO:0004601: peroxidase activity | 3.04E-02 |
| 44 | GO:0004497: monooxygenase activity | 3.54E-02 |
| 45 | GO:0009055: electron carrier activity | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042579: microbody | 0.00E+00 |
| 2 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 3 | GO:0009783: photosystem II antenna complex | 0.00E+00 |
| 4 | GO:0009534: chloroplast thylakoid | 4.21E-28 |
| 5 | GO:0009579: thylakoid | 1.27E-20 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 1.78E-19 |
| 7 | GO:0009507: chloroplast | 2.21E-16 |
| 8 | GO:0009941: chloroplast envelope | 4.68E-14 |
| 9 | GO:0010287: plastoglobule | 4.86E-13 |
| 10 | GO:0009570: chloroplast stroma | 3.25E-08 |
| 11 | GO:0009522: photosystem I | 5.12E-08 |
| 12 | GO:0030076: light-harvesting complex | 8.18E-07 |
| 13 | GO:0009523: photosystem II | 5.43E-06 |
| 14 | GO:0031977: thylakoid lumen | 3.49E-05 |
| 15 | GO:0009508: plastid chromosome | 5.43E-05 |
| 16 | GO:0043036: starch grain | 1.00E-04 |
| 17 | GO:0030093: chloroplast photosystem I | 1.00E-04 |
| 18 | GO:0042651: thylakoid membrane | 1.02E-04 |
| 19 | GO:0009543: chloroplast thylakoid lumen | 1.47E-04 |
| 20 | GO:0009295: nucleoid | 3.14E-04 |
| 21 | GO:0009517: PSII associated light-harvesting complex II | 3.43E-04 |
| 22 | GO:0055035: plastid thylakoid membrane | 4.37E-04 |
| 23 | GO:0009533: chloroplast stromal thylakoid | 7.49E-04 |
| 24 | GO:0009501: amyloplast | 8.61E-04 |
| 25 | GO:0009538: photosystem I reaction center | 8.61E-04 |
| 26 | GO:0000783: nuclear telomere cap complex | 9.77E-04 |
| 27 | GO:0005763: mitochondrial small ribosomal subunit | 1.10E-03 |
| 28 | GO:0042644: chloroplast nucleoid | 1.10E-03 |
| 29 | GO:0048046: apoplast | 1.21E-03 |
| 30 | GO:0009706: chloroplast inner membrane | 1.36E-03 |
| 31 | GO:0030095: chloroplast photosystem II | 1.92E-03 |
| 32 | GO:0009654: photosystem II oxygen evolving complex | 2.55E-03 |
| 33 | GO:0015935: small ribosomal subunit | 2.72E-03 |
| 34 | GO:0005622: intracellular | 3.65E-03 |
| 35 | GO:0019898: extrinsic component of membrane | 4.19E-03 |
| 36 | GO:0005840: ribosome | 4.57E-03 |
| 37 | GO:0010319: stromule | 5.21E-03 |
| 38 | GO:0016020: membrane | 7.51E-03 |
| 39 | GO:0005623: cell | 1.80E-02 |
| 40 | GO:0046658: anchored component of plasma membrane | 2.72E-02 |
| 41 | GO:0031969: chloroplast membrane | 3.54E-02 |