co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G59060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044208: 'de novo' AMP biosynthetic process	1.33E-05
2	GO:0005978: glycogen biosynthetic process	1.54E-04
3	GO:0006189: 'de novo' IMP biosynthetic process	2.02E-04
4	GO:2000652: regulation of secondary cell wall biogenesis	2.79E-04
5	GO:0019684: photosynthesis, light reaction	2.79E-04
6	GO:0015979: photosynthesis	4.04E-04
7	GO:0042631: cellular response to water deprivation	6.67E-04
8	GO:0006814: sodium ion transport	7.34E-04
9	GO:0019252: starch biosynthetic process	7.68E-04
10	GO:0010183: pollen tube guidance	7.68E-04
11	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	8.02E-04
12	GO:0009908: flower development	8.13E-04
13	GO:0009631: cold acclimation	1.32E-03
14	GO:0009624: response to nematode	2.56E-03
15	GO:0006396: RNA processing	2.61E-03
16	GO:0008380: RNA splicing	4.18E-03
17	GO:0009658: chloroplast organization	4.99E-03
18	GO:0045892: negative regulation of transcription, DNA-templated	6.62E-03
19	GO:0006397: mRNA processing	7.80E-03
20	GO:0006357: regulation of transcription from RNA polymerase II promoter	9.22E-03
21	GO:0009416: response to light stimulus	1.13E-02
22	GO:0055085: transmembrane transport	1.34E-02
23	GO:0006979: response to oxidative stress	1.88E-02
24	GO:0030154: cell differentiation	1.99E-02
25	GO:0009409: response to cold	2.32E-02
26	GO:0005975: carbohydrate metabolic process	2.52E-02
27	GO:0009737: response to abscisic acid	3.21E-02
28	GO:0009793: embryo development ending in seed dormancy	3.40E-02
29	GO:0050832: defense response to fungus	4.07E-02
30	GO:0006355: regulation of transcription, DNA-templated	4.10E-02

Rank	GO Term	Adjusted P value
1	GO:0036033: mediator complex binding	0.00E+00
2	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
3	GO:0004018: N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	4.83E-06
4	GO:0070626: (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity	4.83E-06
5	GO:0016868: intramolecular transferase activity, phosphotransferases	1.33E-05
6	GO:0004045: aminoacyl-tRNA hydrolase activity	5.40E-05
7	GO:0008878: glucose-1-phosphate adenylyltransferase activity	5.40E-05
8	GO:0008173: RNA methyltransferase activity	1.78E-04
9	GO:0005315: inorganic phosphate transmembrane transporter activity	3.33E-04
10	GO:0008514: organic anion transmembrane transporter activity	6.03E-04
11	GO:0015293: symporter activity	1.79E-03
12	GO:0015144: carbohydrate transmembrane transporter activity	3.36E-03
13	GO:0005351: sugar:proton symporter activity	3.65E-03
14	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	6.55E-03
15	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	7.06E-03
16	GO:0005515: protein binding	1.58E-02
17	GO:0044212: transcription regulatory region DNA binding	1.87E-02
18	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.38E-02
19	GO:0003677: DNA binding	2.89E-02

Rank	GO Term	Adjusted P value
1	GO:0009538: photosystem I reaction center	4.48E-07
2	GO:0009579: thylakoid	6.73E-05
3	GO:0009507: chloroplast	1.03E-04
4	GO:0010287: plastoglobule	1.22E-04
5	GO:0009570: chloroplast stroma	2.06E-04
6	GO:0009535: chloroplast thylakoid membrane	4.26E-04
7	GO:0030529: intracellular ribonucleoprotein complex	1.01E-03
8	GO:0009534: chloroplast thylakoid	1.07E-03
9	GO:0031969: chloroplast membrane	5.79E-03
10	GO:0009941: chloroplast envelope	8.11E-03