co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G59060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
3	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
4	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
5	GO:0015979: photosynthesis	4.33E-16
6	GO:0090391: granum assembly	1.33E-08
7	GO:0009768: photosynthesis, light harvesting in photosystem I	3.17E-08
8	GO:0032544: plastid translation	5.10E-08
9	GO:0009773: photosynthetic electron transport in photosystem I	2.68E-07
10	GO:0010114: response to red light	2.69E-07
11	GO:0055114: oxidation-reduction process	3.69E-07
12	GO:0010207: photosystem II assembly	6.85E-07
13	GO:0019253: reductive pentose-phosphate cycle	6.85E-07
14	GO:0015995: chlorophyll biosynthetic process	1.39E-06
15	GO:0018298: protein-chromophore linkage	1.83E-06
16	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.28E-06
17	GO:0010218: response to far red light	2.37E-06
18	GO:0010196: nonphotochemical quenching	2.39E-06
19	GO:0009637: response to blue light	3.43E-06
20	GO:0006000: fructose metabolic process	8.31E-06
21	GO:0006094: gluconeogenesis	2.71E-05
22	GO:0006546: glycine catabolic process	3.46E-05
23	GO:0006636: unsaturated fatty acid biosynthetic process	4.76E-05
24	GO:0034599: cellular response to oxidative stress	7.06E-05
25	GO:0009735: response to cytokinin	8.33E-05
26	GO:0009854: oxidative photosynthetic carbon pathway	1.13E-04
27	GO:0009645: response to low light intensity stimulus	1.49E-04
28	GO:0009772: photosynthetic electron transport in photosystem II	1.49E-04
29	GO:0006662: glycerol ether metabolic process	1.59E-04
30	GO:0009704: de-etiolation	1.91E-04
31	GO:0051180: vitamin transport	2.20E-04
32	GO:0043953: protein transport by the Tat complex	2.20E-04
33	GO:0071277: cellular response to calcium ion	2.20E-04
34	GO:0030974: thiamine pyrophosphate transport	2.20E-04
35	GO:0046467: membrane lipid biosynthetic process	2.20E-04
36	GO:0065002: intracellular protein transmembrane transport	2.20E-04
37	GO:0080093: regulation of photorespiration	2.20E-04
38	GO:0031998: regulation of fatty acid beta-oxidation	2.20E-04
39	GO:0019510: S-adenosylhomocysteine catabolic process	2.20E-04
40	GO:0006002: fructose 6-phosphate metabolic process	2.36E-04
41	GO:0009658: chloroplast organization	2.63E-04
42	GO:0006754: ATP biosynthetic process	2.86E-04
43	GO:0010205: photoinhibition	3.41E-04
44	GO:0010027: thylakoid membrane organization	3.53E-04
45	GO:0018119: peptidyl-cysteine S-nitrosylation	4.63E-04
46	GO:0015893: drug transport	4.90E-04
47	GO:0033353: S-adenosylmethionine cycle	4.90E-04
48	GO:0008616: queuosine biosynthetic process	4.90E-04
49	GO:0042742: defense response to bacterium	5.91E-04
50	GO:0005986: sucrose biosynthetic process	6.01E-04
51	GO:0032259: methylation	7.33E-04
52	GO:0006518: peptide metabolic process	7.98E-04
53	GO:0006081: cellular aldehyde metabolic process	7.98E-04
54	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.14E-03
55	GO:0071484: cellular response to light intensity	1.14E-03
56	GO:0009409: response to cold	1.15E-03
57	GO:0015994: chlorophyll metabolic process	1.51E-03
58	GO:0010600: regulation of auxin biosynthetic process	1.51E-03
59	GO:0015976: carbon utilization	1.51E-03
60	GO:0019464: glycine decarboxylation via glycine cleavage system	1.51E-03
61	GO:0009765: photosynthesis, light harvesting	1.51E-03
62	GO:0006109: regulation of carbohydrate metabolic process	1.51E-03
63	GO:0045727: positive regulation of translation	1.51E-03
64	GO:0043086: negative regulation of catalytic activity	1.65E-03
65	GO:0006096: glycolytic process	1.65E-03
66	GO:0042631: cellular response to water deprivation	1.68E-03
67	GO:0006656: phosphatidylcholine biosynthetic process	1.93E-03
68	GO:0043097: pyrimidine nucleoside salvage	1.93E-03
69	GO:0006097: glyoxylate cycle	1.93E-03
70	GO:0009107: lipoate biosynthetic process	1.93E-03
71	GO:0015986: ATP synthesis coupled proton transport	1.95E-03
72	GO:0006206: pyrimidine nucleobase metabolic process	2.38E-03
73	GO:0010190: cytochrome b6f complex assembly	2.38E-03
74	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.38E-03
75	GO:0050665: hydrogen peroxide biosynthetic process	2.38E-03
76	GO:0045454: cell redox homeostasis	2.61E-03
77	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.86E-03
78	GO:0017148: negative regulation of translation	2.86E-03
79	GO:0010189: vitamin E biosynthetic process	2.86E-03
80	GO:0009769: photosynthesis, light harvesting in photosystem II	3.36E-03
81	GO:1900057: positive regulation of leaf senescence	3.36E-03
82	GO:0010161: red light signaling pathway	3.36E-03
83	GO:0010928: regulation of auxin mediated signaling pathway	3.90E-03
84	GO:0009642: response to light intensity	3.90E-03
85	GO:0009657: plastid organization	4.47E-03
86	GO:0006526: arginine biosynthetic process	4.47E-03
87	GO:0071482: cellular response to light stimulus	4.47E-03
88	GO:0006810: transport	4.53E-03
89	GO:0010206: photosystem II repair	5.06E-03
90	GO:0090333: regulation of stomatal closure	5.06E-03
91	GO:0006783: heme biosynthetic process	5.06E-03
92	GO:0009853: photorespiration	5.30E-03
93	GO:0042761: very long-chain fatty acid biosynthetic process	5.68E-03
94	GO:0006779: porphyrin-containing compound biosynthetic process	5.68E-03
95	GO:0006782: protoporphyrinogen IX biosynthetic process	6.32E-03
96	GO:0009698: phenylpropanoid metabolic process	6.98E-03
97	GO:0019684: photosynthesis, light reaction	6.98E-03
98	GO:0043085: positive regulation of catalytic activity	6.98E-03
99	GO:0000272: polysaccharide catabolic process	6.98E-03
100	GO:0009644: response to high light intensity	7.39E-03
101	GO:0006108: malate metabolic process	8.39E-03
102	GO:0006006: glucose metabolic process	8.39E-03
103	GO:0018107: peptidyl-threonine phosphorylation	8.39E-03
104	GO:0009725: response to hormone	8.39E-03
105	GO:0009767: photosynthetic electron transport chain	8.39E-03
106	GO:0009416: response to light stimulus	8.56E-03
107	GO:0006364: rRNA processing	9.22E-03
108	GO:0005985: sucrose metabolic process	9.90E-03
109	GO:0019762: glucosinolate catabolic process	1.07E-02
110	GO:0000027: ribosomal large subunit assembly	1.15E-02
111	GO:0031408: oxylipin biosynthetic process	1.32E-02
112	GO:0009269: response to desiccation	1.32E-02
113	GO:0006396: RNA processing	1.35E-02
114	GO:0006869: lipid transport	1.36E-02
115	GO:0006730: one-carbon metabolic process	1.40E-02
116	GO:0019748: secondary metabolic process	1.40E-02
117	GO:0030245: cellulose catabolic process	1.40E-02
118	GO:0010017: red or far-red light signaling pathway	1.40E-02
119	GO:0009306: protein secretion	1.58E-02
120	GO:0006606: protein import into nucleus	1.77E-02
121	GO:0006520: cellular amino acid metabolic process	1.87E-02
122	GO:0048868: pollen tube development	1.87E-02
123	GO:0006814: sodium ion transport	1.97E-02
124	GO:0019252: starch biosynthetic process	2.07E-02
125	GO:0010583: response to cyclopentenone	2.28E-02
126	GO:0007623: circadian rhythm	2.28E-02
127	GO:0009567: double fertilization forming a zygote and endosperm	2.49E-02
128	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.94E-02
129	GO:0010411: xyloglucan metabolic process	3.17E-02
130	GO:0007568: aging	3.78E-02
131	GO:0016051: carbohydrate biosynthetic process	4.03E-02
132	GO:0006099: tricarboxylic acid cycle	4.16E-02
133	GO:0080167: response to karrikin	4.36E-02
134	GO:0006839: mitochondrial transport	4.43E-02
135	GO:0046686: response to cadmium ion	4.70E-02
136	GO:0044550: secondary metabolite biosynthetic process	4.73E-02
137	GO:0009744: response to sucrose	4.83E-02
138	GO:0042546: cell wall biogenesis	4.97E-02
139	GO:0006412: translation	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
4	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
5	GO:0045550: geranylgeranyl reductase activity	0.00E+00
6	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
7	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
8	GO:0008974: phosphoribulokinase activity	0.00E+00
9	GO:0008465: glycerate dehydrogenase activity	0.00E+00
10	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
11	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
12	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
13	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
14	GO:0031409: pigment binding	1.74E-08
15	GO:0016168: chlorophyll binding	1.04E-06
16	GO:0018708: thiol S-methyltransferase activity	2.28E-06
17	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.28E-06
18	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.31E-06
19	GO:0016491: oxidoreductase activity	1.19E-05
20	GO:0047134: protein-disulfide reductase activity	1.27E-04
21	GO:0051287: NAD binding	1.46E-04
22	GO:0004791: thioredoxin-disulfide reductase activity	1.76E-04
23	GO:0045485: omega-6 fatty acid desaturase activity	2.20E-04
24	GO:0010313: phytochrome binding	2.20E-04
25	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.20E-04
26	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.20E-04
27	GO:0090422: thiamine pyrophosphate transporter activity	2.20E-04
28	GO:0004013: adenosylhomocysteinase activity	2.20E-04
29	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.36E-04
30	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.56E-04
31	GO:0030234: enzyme regulator activity	4.00E-04
32	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.90E-04
33	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.90E-04
34	GO:0004802: transketolase activity	4.90E-04
35	GO:0000234: phosphoethanolamine N-methyltransferase activity	4.90E-04
36	GO:0008883: glutamyl-tRNA reductase activity	4.90E-04
37	GO:0047746: chlorophyllase activity	4.90E-04
38	GO:0010297: heteropolysaccharide binding	4.90E-04
39	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.90E-04
40	GO:0004047: aminomethyltransferase activity	4.90E-04
41	GO:0008479: queuine tRNA-ribosyltransferase activity	4.90E-04
42	GO:0016992: lipoate synthase activity	7.98E-04
43	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	7.98E-04
44	GO:0010277: chlorophyllide a oxygenase [overall] activity	7.98E-04
45	GO:0048027: mRNA 5'-UTR binding	1.14E-03
46	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.14E-03
47	GO:0016851: magnesium chelatase activity	1.14E-03
48	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.14E-03
49	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.14E-03
50	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.14E-03
51	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.14E-03
52	GO:0008168: methyltransferase activity	1.35E-03
53	GO:0052793: pectin acetylesterase activity	1.51E-03
54	GO:0008891: glycolate oxidase activity	1.51E-03
55	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.51E-03
56	GO:0008453: alanine-glyoxylate transaminase activity	1.51E-03
57	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.81E-03
58	GO:0015035: protein disulfide oxidoreductase activity	2.17E-03
59	GO:0048038: quinone binding	2.23E-03
60	GO:0042578: phosphoric ester hydrolase activity	2.38E-03
61	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.38E-03
62	GO:0016615: malate dehydrogenase activity	2.38E-03
63	GO:0004332: fructose-bisphosphate aldolase activity	2.38E-03
64	GO:0019843: rRNA binding	2.78E-03
65	GO:0030060: L-malate dehydrogenase activity	2.86E-03
66	GO:0004849: uridine kinase activity	2.86E-03
67	GO:0004033: aldo-keto reductase (NADP) activity	3.90E-03
68	GO:0071949: FAD binding	5.06E-03
69	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	5.06E-03
70	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.68E-03
71	GO:0050661: NADP binding	6.04E-03
72	GO:0008047: enzyme activator activity	6.32E-03
73	GO:0004185: serine-type carboxypeptidase activity	6.83E-03
74	GO:0003735: structural constituent of ribosome	8.20E-03
75	GO:0005315: inorganic phosphate transmembrane transporter activity	8.39E-03
76	GO:0004089: carbonate dehydratase activity	8.39E-03
77	GO:0031072: heat shock protein binding	8.39E-03
78	GO:0008266: poly(U) RNA binding	9.13E-03
79	GO:0004857: enzyme inhibitor activity	1.15E-02
80	GO:0005528: FK506 binding	1.15E-02
81	GO:0005507: copper ion binding	1.46E-02
82	GO:0008810: cellulase activity	1.49E-02
83	GO:0003727: single-stranded RNA binding	1.58E-02
84	GO:0008514: organic anion transmembrane transporter activity	1.58E-02
85	GO:0008080: N-acetyltransferase activity	1.87E-02
86	GO:0010181: FMN binding	1.97E-02
87	GO:0050662: coenzyme binding	1.97E-02
88	GO:0008565: protein transporter activity	1.98E-02
89	GO:0004872: receptor activity	2.07E-02
90	GO:0046910: pectinesterase inhibitor activity	2.12E-02
91	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.17E-02
92	GO:0004518: nuclease activity	2.28E-02
93	GO:0008289: lipid binding	2.38E-02
94	GO:0008483: transaminase activity	2.60E-02
95	GO:0042802: identical protein binding	2.90E-02
96	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.17E-02
97	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.29E-02
98	GO:0004222: metalloendopeptidase activity	3.66E-02
99	GO:0003746: translation elongation factor activity	4.03E-02
100	GO:0003993: acid phosphatase activity	4.16E-02