gene detail

Gene description

TAIR ID: AT3G57080

Short description: Eukaryotic rpb5 RNA polymerase subunit family protein

Pathogen responsiveness: -1.40

General responsiveness: -3.04

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G162697

Wheat:

TA.22335.2.S1_AT TA.22335.2.S1_X_AT

GO biological process

transcription, DNA-templated

GO cellular component

DNA-directed RNA polymerase V complex, nucleus

GO molecular function

RNA polymerase III activity, DNA-directed 5'-3' RNA polymerase activity, RNA polymerase II activity, RNA polymerase I activity, protein binding

Protein domain

Pfam	PF03871, RNA polymerase Rpb5, N-terminal domain
Pfam	PF01191, RNA polymerase Rpb5, C-terminal domain

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath00230: Purine metabolism
PATH:ath00240: Pyrimidine metabolism
PATH:ath03020: RNA polymerase

Transcriptional regulation

Regulator:
AT3G47640

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 2 h	-1.67	6.75E-05
GSE17464	Penta, control	Penta, Flg22 2 h	-1.58	1.18E-04
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.61	2.67E-11
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.83	1.16E-12
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.50	7.23E-03