gene detail

Gene description

TAIR ID: AT3G53920

Short description: RNApolymerase sigma-subunit C

Pathogen responsiveness: -0.52

General responsiveness: 1.31

Orthologous

Rice: No orthologous gene

Maize:

GRMZM5G830932

Wheat:

TAAFFX.4773.1.S1_AT

GO biological process

regulation of transcription, DNA-templated, cellular response to light stimulus, DNA-templated transcription, initiation, regulation of RNA biosynthetic process, photosynthesis, dark reaction

GO cellular component

chloroplast

GO molecular function

transcription factor activity, sequence-specific DNA binding, DNA binding, DNA-directed 5'-3' RNA polymerase activity, sigma factor activity, plastid sigma factor activity

Protein domain

Pfam	PF04545, Sigma-70, region 4
Pfam	PF04542, Sigma-70 region 2
Pfam	PF04539, Sigma-70 region 3

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G51600, AT5G47230, AT3G15210, AT3G14230, AT5G47220, AT3G20310, AT1G50640, AT5G61850, AT3G20770, AT4G17500

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

17 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE11807	Col, mpk6 ko, water 4 h	Col, mpk6 ko, Flg22 4 h	-1.52	2.16E-02
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	-1.59	3.67E-08
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 1 h	-1.93	1.52E-03
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 2 h	-1.99	9.86E-04
GSE17464	Laer, control	Laer, Flg22 1 h	-1.58	3.58E-03
GSE17464	Laer, control	Laer, Flg22 2 h	-2.00	2.46E-04
GSE17464	Penta, control	Penta, Flg22 2 h	-2.05	1.57E-04
GSE17464	Penta, control	Penta, Flg22 2 h	-2.20	6.50E-05
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.73	4.25E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.88	3.11E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.53	6.88E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.73	1.40E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.88	2.96E-11
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.10	3.26E-12
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	-1.55	1.42E-02
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.80	1.78E-07
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.45	1.35E-03