co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0009583: detection of light stimulus	0.00E+00
4	GO:0090470: shoot organ boundary specification	0.00E+00
5	GO:0071000: response to magnetism	0.00E+00
6	GO:0010343: singlet oxygen-mediated programmed cell death	6.85E-07
7	GO:0080005: photosystem stoichiometry adjustment	6.85E-07
8	GO:0006013: mannose metabolic process	2.59E-06
9	GO:1901672: positive regulation of systemic acquired resistance	2.59E-06
10	GO:0015995: chlorophyll biosynthetic process	5.34E-06
11	GO:0016123: xanthophyll biosynthetic process	1.90E-05
12	GO:0016120: carotene biosynthetic process	1.90E-05
13	GO:0010362: negative regulation of anion channel activity by blue light	1.16E-04
14	GO:0031426: polycistronic mRNA processing	1.16E-04
15	GO:0072387: flavin adenine dinucleotide metabolic process	1.16E-04
16	GO:0042371: vitamin K biosynthetic process	1.16E-04
17	GO:0071461: cellular response to redox state	1.16E-04
18	GO:1900426: positive regulation of defense response to bacterium	1.34E-04
19	GO:0009638: phototropism	1.34E-04
20	GO:0009767: photosynthetic electron transport chain	2.47E-04
21	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.69E-04
22	GO:1901529: positive regulation of anion channel activity	2.69E-04
23	GO:0048255: mRNA stabilization	2.69E-04
24	GO:0034755: iron ion transmembrane transport	2.69E-04
25	GO:0010617: circadian regulation of calcium ion oscillation	2.69E-04
26	GO:0000256: allantoin catabolic process	2.69E-04
27	GO:0099402: plant organ development	2.69E-04
28	GO:0009658: chloroplast organization	3.63E-04
29	GO:1902448: positive regulation of shade avoidance	4.45E-04
30	GO:0002230: positive regulation of defense response to virus by host	4.45E-04
31	GO:0010136: ureide catabolic process	4.45E-04
32	GO:0009150: purine ribonucleotide metabolic process	4.45E-04
33	GO:0006696: ergosterol biosynthetic process	4.45E-04
34	GO:0016226: iron-sulfur cluster assembly	5.19E-04
35	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.38E-04
36	GO:0010371: regulation of gibberellin biosynthetic process	6.38E-04
37	GO:0010239: chloroplast mRNA processing	6.38E-04
38	GO:0090307: mitotic spindle assembly	6.38E-04
39	GO:0006145: purine nucleobase catabolic process	6.38E-04
40	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	6.38E-04
41	GO:0033014: tetrapyrrole biosynthetic process	6.38E-04
42	GO:1901332: negative regulation of lateral root development	6.38E-04
43	GO:2001141: regulation of RNA biosynthetic process	6.38E-04
44	GO:0016117: carotenoid biosynthetic process	6.61E-04
45	GO:0010118: stomatal movement	7.13E-04
46	GO:0015743: malate transport	8.47E-04
47	GO:0031935: regulation of chromatin silencing	8.47E-04
48	GO:0009765: photosynthesis, light harvesting	8.47E-04
49	GO:0006552: leucine catabolic process	8.47E-04
50	GO:0031122: cytoplasmic microtubule organization	8.47E-04
51	GO:1902347: response to strigolactone	8.47E-04
52	GO:0009902: chloroplast relocation	8.47E-04
53	GO:0009791: post-embryonic development	8.79E-04
54	GO:0006282: regulation of DNA repair	1.07E-03
55	GO:0034052: positive regulation of plant-type hypersensitive response	1.07E-03
56	GO:0000304: response to singlet oxygen	1.07E-03
57	GO:0010117: photoprotection	1.07E-03
58	GO:0046283: anthocyanin-containing compound metabolic process	1.07E-03
59	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.31E-03
60	GO:1901371: regulation of leaf morphogenesis	1.31E-03
61	GO:0060918: auxin transport	1.31E-03
62	GO:0010190: cytochrome b6f complex assembly	1.31E-03
63	GO:0009816: defense response to bacterium, incompatible interaction	1.41E-03
64	GO:0010310: regulation of hydrogen peroxide metabolic process	1.56E-03
65	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.56E-03
66	GO:0010019: chloroplast-nucleus signaling pathway	1.56E-03
67	GO:0018298: protein-chromophore linkage	1.73E-03
68	GO:0006401: RNA catabolic process	1.84E-03
69	GO:1900056: negative regulation of leaf senescence	1.84E-03
70	GO:0051510: regulation of unidimensional cell growth	1.84E-03
71	GO:0007568: aging	1.99E-03
72	GO:0048564: photosystem I assembly	2.13E-03
73	GO:0006402: mRNA catabolic process	2.13E-03
74	GO:0009704: de-etiolation	2.13E-03
75	GO:0009637: response to blue light	2.18E-03
76	GO:0071482: cellular response to light stimulus	2.43E-03
77	GO:0009657: plastid organization	2.43E-03
78	GO:0032544: plastid translation	2.43E-03
79	GO:0048507: meristem development	2.74E-03
80	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.74E-03
81	GO:0006783: heme biosynthetic process	2.74E-03
82	GO:0009640: photomorphogenesis	2.80E-03
83	GO:0010114: response to red light	2.80E-03
84	GO:0006779: porphyrin-containing compound biosynthetic process	3.07E-03
85	GO:0010380: regulation of chlorophyll biosynthetic process	3.07E-03
86	GO:0031425: chloroplast RNA processing	3.07E-03
87	GO:0046777: protein autophosphorylation	3.32E-03
88	GO:0051555: flavonol biosynthetic process	3.41E-03
89	GO:0045036: protein targeting to chloroplast	3.41E-03
90	GO:0008285: negative regulation of cell proliferation	3.76E-03
91	GO:0006364: rRNA processing	3.76E-03
92	GO:0043085: positive regulation of catalytic activity	3.76E-03
93	GO:0006879: cellular iron ion homeostasis	3.76E-03
94	GO:0006352: DNA-templated transcription, initiation	3.76E-03
95	GO:0006790: sulfur compound metabolic process	4.13E-03
96	GO:0006417: regulation of translation	4.16E-03
97	GO:0010075: regulation of meristem growth	4.50E-03
98	GO:0009725: response to hormone	4.50E-03
99	GO:0009785: blue light signaling pathway	4.50E-03
100	GO:0019253: reductive pentose-phosphate cycle	4.89E-03
101	GO:0010207: photosystem II assembly	4.89E-03
102	GO:0055114: oxidation-reduction process	4.91E-03
103	GO:2000377: regulation of reactive oxygen species metabolic process	6.12E-03
104	GO:0010073: meristem maintenance	6.56E-03
105	GO:0007017: microtubule-based process	6.56E-03
106	GO:0080092: regulation of pollen tube growth	7.46E-03
107	GO:0010227: floral organ abscission	7.92E-03
108	GO:0007623: circadian rhythm	9.21E-03
109	GO:0008033: tRNA processing	9.38E-03
110	GO:0009451: RNA modification	9.43E-03
111	GO:0010228: vegetative to reproductive phase transition of meristem	9.65E-03
112	GO:0042752: regulation of circadian rhythm	1.04E-02
113	GO:0009646: response to absence of light	1.04E-02
114	GO:0006814: sodium ion transport	1.04E-02
115	GO:0006508: proteolysis	1.07E-02
116	GO:0010468: regulation of gene expression	1.10E-02
117	GO:0031047: gene silencing by RNA	1.20E-02
118	GO:0046686: response to cadmium ion	1.24E-02
119	GO:0051607: defense response to virus	1.43E-02
120	GO:0080167: response to karrikin	1.78E-02
121	GO:0000160: phosphorelay signal transduction system	1.86E-02
122	GO:0006811: ion transport	1.92E-02
123	GO:0010218: response to far red light	1.92E-02
124	GO:0009910: negative regulation of flower development	1.99E-02
125	GO:0009793: embryo development ending in seed dormancy	2.24E-02
126	GO:0009744: response to sucrose	2.54E-02
127	GO:0009644: response to high light intensity	2.69E-02
128	GO:0006397: mRNA processing	2.74E-02
129	GO:0051603: proteolysis involved in cellular protein catabolic process	3.22E-02
130	GO:0006096: glycolytic process	3.54E-02
131	GO:0009626: plant-type hypersensitive response	3.71E-02
132	GO:0016569: covalent chromatin modification	3.87E-02
133	GO:0006810: transport	4.06E-02
134	GO:0006396: RNA processing	4.13E-02
135	GO:0009735: response to cytokinin	4.24E-02
136	GO:0009416: response to light stimulus	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
4	GO:0046905: phytoene synthase activity	0.00E+00
5	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
6	GO:0004848: ureidoglycolate hydrolase activity	2.59E-06
7	GO:0009882: blue light photoreceptor activity	6.10E-06
8	GO:0004559: alpha-mannosidase activity	4.06E-05
9	GO:0048038: quinone binding	5.85E-05
10	GO:0008237: metallopeptidase activity	8.60E-05
11	GO:0071949: FAD binding	1.11E-04
12	GO:0004654: polyribonucleotide nucleotidyltransferase activity	1.16E-04
13	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.16E-04
14	GO:0004485: methylcrotonoyl-CoA carboxylase activity	1.16E-04
15	GO:0046906: tetrapyrrole binding	1.16E-04
16	GO:0004325: ferrochelatase activity	1.16E-04
17	GO:0051996: squalene synthase activity	1.16E-04
18	GO:0016783: sulfurtransferase activity	1.16E-04
19	GO:0030941: chloroplast targeting sequence binding	1.16E-04
20	GO:0016491: oxidoreductase activity	1.27E-04
21	GO:0004618: phosphoglycerate kinase activity	2.69E-04
22	GO:0004047: aminomethyltransferase activity	2.69E-04
23	GO:0015367: oxoglutarate:malate antiporter activity	2.69E-04
24	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	2.69E-04
25	GO:0004180: carboxypeptidase activity	4.45E-04
26	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.45E-04
27	GO:0032947: protein complex scaffold	4.45E-04
28	GO:0004148: dihydrolipoyl dehydrogenase activity	4.45E-04
29	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	4.45E-04
30	GO:0004075: biotin carboxylase activity	4.45E-04
31	GO:0004176: ATP-dependent peptidase activity	4.74E-04
32	GO:0048027: mRNA 5'-UTR binding	6.38E-04
33	GO:0016851: magnesium chelatase activity	6.38E-04
34	GO:0004792: thiosulfate sulfurtransferase activity	6.38E-04
35	GO:0047627: adenylylsulfatase activity	6.38E-04
36	GO:0008080: N-acetyltransferase activity	7.67E-04
37	GO:0001053: plastid sigma factor activity	8.47E-04
38	GO:0051861: glycolipid binding	8.47E-04
39	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.47E-04
40	GO:0016987: sigma factor activity	8.47E-04
41	GO:0043015: gamma-tubulin binding	8.47E-04
42	GO:0051011: microtubule minus-end binding	1.07E-03
43	GO:0000293: ferric-chelate reductase activity	1.31E-03
44	GO:0015631: tubulin binding	1.56E-03
45	GO:0016887: ATPase activity	1.76E-03
46	GO:0019899: enzyme binding	1.84E-03
47	GO:0004222: metalloendopeptidase activity	1.90E-03
48	GO:0050897: cobalt ion binding	1.99E-03
49	GO:0005381: iron ion transmembrane transporter activity	3.07E-03
50	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.76E-03
51	GO:0031072: heat shock protein binding	4.50E-03
52	GO:0000155: phosphorelay sensor kinase activity	4.50E-03
53	GO:0000175: 3'-5'-exoribonuclease activity	4.50E-03
54	GO:0004519: endonuclease activity	5.56E-03
55	GO:0051536: iron-sulfur cluster binding	6.12E-03
56	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	6.85E-03
57	GO:0003727: single-stranded RNA binding	8.40E-03
58	GO:0005524: ATP binding	1.01E-02
59	GO:0010181: FMN binding	1.04E-02
60	GO:0004872: receptor activity	1.09E-02
61	GO:0042802: identical protein binding	1.17E-02
62	GO:0004518: nuclease activity	1.20E-02
63	GO:0008483: transaminase activity	1.37E-02
64	GO:0005200: structural constituent of cytoskeleton	1.37E-02
65	GO:0008236: serine-type peptidase activity	1.73E-02
66	GO:0003723: RNA binding	1.96E-02
67	GO:0005506: iron ion binding	2.47E-02
68	GO:0004185: serine-type carboxypeptidase activity	2.54E-02
69	GO:0051537: 2 iron, 2 sulfur cluster binding	2.69E-02
70	GO:0043621: protein self-association	2.69E-02
71	GO:0005198: structural molecule activity	2.76E-02
72	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.15E-02
73	GO:0003777: microtubule motor activity	3.38E-02
74	GO:0031625: ubiquitin protein ligase binding	3.38E-02
75	GO:0008270: zinc ion binding	3.64E-02
76	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.79E-02
77	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.79E-02
78	GO:0022857: transmembrane transporter activity	3.87E-02
79	GO:0051082: unfolded protein binding	4.04E-02
80	GO:0016746: transferase activity, transferring acyl groups	4.13E-02
81	GO:0019843: rRNA binding	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.94E-19
2	GO:0009535: chloroplast thylakoid membrane	2.45E-07
3	GO:0031969: chloroplast membrane	2.76E-07
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.11E-04
5	GO:0008274: gamma-tubulin ring complex	2.69E-04
6	GO:0042651: thylakoid membrane	4.32E-04
7	GO:0010007: magnesium chelatase complex	4.45E-04
8	GO:0016605: PML body	4.45E-04
9	GO:0000923: equatorial microtubule organizing center	6.38E-04
10	GO:0030286: dynein complex	8.47E-04
11	GO:0055035: plastid thylakoid membrane	1.07E-03
12	GO:0031359: integral component of chloroplast outer membrane	1.84E-03
13	GO:0009536: plastid	2.16E-03
14	GO:0042644: chloroplast nucleoid	2.74E-03
15	GO:0000922: spindle pole	2.74E-03
16	GO:0016604: nuclear body	3.07E-03
17	GO:0016324: apical plasma membrane	3.41E-03
18	GO:0009570: chloroplast stroma	4.86E-03
19	GO:0009706: chloroplast inner membrane	5.34E-03
20	GO:0005875: microtubule associated complex	5.70E-03
21	GO:0005759: mitochondrial matrix	8.39E-03
22	GO:0005739: mitochondrion	8.89E-03
23	GO:0009707: chloroplast outer membrane	1.80E-02
24	GO:0009941: chloroplast envelope	2.22E-02
25	GO:0043231: intracellular membrane-bounded organelle	2.89E-02
26	GO:0031966: mitochondrial membrane	2.99E-02
27	GO:0005747: mitochondrial respiratory chain complex I	3.63E-02
28	GO:0010287: plastoglobule	4.56E-02