co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071000: response to magnetism	0.00E+00
2	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
3	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
4	GO:0009583: detection of light stimulus	0.00E+00
5	GO:0072387: flavin adenine dinucleotide metabolic process	6.91E-05
6	GO:0043087: regulation of GTPase activity	6.91E-05
7	GO:0043609: regulation of carbon utilization	6.91E-05
8	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	6.91E-05
9	GO:0080167: response to karrikin	1.64E-04
10	GO:0010617: circadian regulation of calcium ion oscillation	1.66E-04
11	GO:0099402: plant organ development	1.66E-04
12	GO:0001736: establishment of planar polarity	1.66E-04
13	GO:0043039: tRNA aminoacylation	1.66E-04
14	GO:0010343: singlet oxygen-mediated programmed cell death	1.66E-04
15	GO:1901529: positive regulation of anion channel activity	1.66E-04
16	GO:0042780: tRNA 3'-end processing	2.81E-04
17	GO:0045493: xylan catabolic process	2.81E-04
18	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	2.81E-04
19	GO:1902448: positive regulation of shade avoidance	2.81E-04
20	GO:0006000: fructose metabolic process	2.81E-04
21	GO:1901672: positive regulation of systemic acquired resistance	2.81E-04
22	GO:1901332: negative regulation of lateral root development	4.06E-04
23	GO:0009793: embryo development ending in seed dormancy	4.54E-04
24	GO:1902347: response to strigolactone	5.42E-04
25	GO:0010117: photoprotection	6.87E-04
26	GO:0046283: anthocyanin-containing compound metabolic process	6.87E-04
27	GO:0010158: abaxial cell fate specification	6.87E-04
28	GO:0010411: xyloglucan metabolic process	8.10E-04
29	GO:0060918: auxin transport	8.40E-04
30	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	8.40E-04
31	GO:1901371: regulation of leaf morphogenesis	8.40E-04
32	GO:0000160: phosphorelay signal transduction system	9.34E-04
33	GO:0009942: longitudinal axis specification	9.99E-04
34	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	9.99E-04
35	GO:0010310: regulation of hydrogen peroxide metabolic process	9.99E-04
36	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	9.99E-04
37	GO:0051510: regulation of unidimensional cell growth	1.17E-03
38	GO:0010050: vegetative phase change	1.17E-03
39	GO:0019745: pentacyclic triterpenoid biosynthetic process	1.17E-03
40	GO:0009850: auxin metabolic process	1.34E-03
41	GO:0009926: auxin polar transport	1.42E-03
42	GO:0007389: pattern specification process	1.53E-03
43	GO:0009932: cell tip growth	1.53E-03
44	GO:0006002: fructose 6-phosphate metabolic process	1.53E-03
45	GO:0009736: cytokinin-activated signaling pathway	1.90E-03
46	GO:1900426: positive regulation of defense response to bacterium	1.93E-03
47	GO:0009638: phototropism	1.93E-03
48	GO:0006535: cysteine biosynthetic process from serine	2.14E-03
49	GO:0048829: root cap development	2.14E-03
50	GO:0009750: response to fructose	2.36E-03
51	GO:0048765: root hair cell differentiation	2.36E-03
52	GO:0010582: floral meristem determinacy	2.58E-03
53	GO:0009733: response to auxin	2.61E-03
54	GO:0009624: response to nematode	2.69E-03
55	GO:0010075: regulation of meristem growth	2.82E-03
56	GO:0009785: blue light signaling pathway	2.82E-03
57	GO:0010207: photosystem II assembly	3.06E-03
58	GO:0009734: auxin-activated signaling pathway	3.20E-03
59	GO:0010053: root epidermal cell differentiation	3.30E-03
60	GO:2000377: regulation of reactive oxygen species metabolic process	3.81E-03
61	GO:0019344: cysteine biosynthetic process	3.81E-03
62	GO:0006418: tRNA aminoacylation for protein translation	4.08E-03
63	GO:0009416: response to light stimulus	4.28E-03
64	GO:0003333: amino acid transmembrane transport	4.35E-03
65	GO:0045490: pectin catabolic process	4.62E-03
66	GO:0016226: iron-sulfur cluster assembly	4.63E-03
67	GO:0009451: RNA modification	4.72E-03
68	GO:0010082: regulation of root meristem growth	4.91E-03
69	GO:0006284: base-excision repair	5.20E-03
70	GO:0010118: stomatal movement	5.80E-03
71	GO:0009958: positive gravitropism	6.11E-03
72	GO:0048868: pollen tube development	6.11E-03
73	GO:0042752: regulation of circadian rhythm	6.42E-03
74	GO:0009646: response to absence of light	6.42E-03
75	GO:0009749: response to glucose	6.74E-03
76	GO:0010583: response to cyclopentenone	7.40E-03
77	GO:0010090: trichome morphogenesis	7.73E-03
78	GO:0010252: auxin homeostasis	8.08E-03
79	GO:0018298: protein-chromophore linkage	1.10E-02
80	GO:0010311: lateral root formation	1.14E-02
81	GO:0006499: N-terminal protein myristoylation	1.18E-02
82	GO:0010218: response to far red light	1.18E-02
83	GO:0006865: amino acid transport	1.26E-02
84	GO:0009637: response to blue light	1.30E-02
85	GO:0010114: response to red light	1.56E-02
86	GO:0009744: response to sucrose	1.56E-02
87	GO:0009640: photomorphogenesis	1.56E-02
88	GO:0042546: cell wall biogenesis	1.60E-02
89	GO:0009644: response to high light intensity	1.65E-02
90	GO:0043086: negative regulation of catalytic activity	2.17E-02
91	GO:0009740: gibberellic acid mediated signaling pathway	2.37E-02
92	GO:0009553: embryo sac development	2.42E-02
93	GO:0051726: regulation of cell cycle	2.58E-02
94	GO:0055085: transmembrane transport	2.96E-02
95	GO:0042744: hydrogen peroxide catabolic process	3.18E-02
96	GO:0009790: embryo development	3.24E-02
97	GO:0006633: fatty acid biosynthetic process	3.41E-02
98	GO:0007623: circadian rhythm	3.65E-02
99	GO:0009739: response to gibberellin	3.95E-02
100	GO:0071555: cell wall organization	4.69E-02
101	GO:0009658: chloroplast organization	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
3	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
4	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
5	GO:0102245: lupan-3beta,20-diol synthase activity	0.00E+00
6	GO:0004831: tyrosine-tRNA ligase activity	6.91E-05
7	GO:0050017: L-3-cyanoalanine synthase activity	1.66E-04
8	GO:0005094: Rho GDP-dissociation inhibitor activity	1.66E-04
9	GO:0004047: aminomethyltransferase activity	1.66E-04
10	GO:0008805: carbon-monoxide oxygenase activity	1.66E-04
11	GO:0042300: beta-amyrin synthase activity	2.81E-04
12	GO:0042781: 3'-tRNA processing endoribonuclease activity	2.81E-04
13	GO:0030570: pectate lyase activity	2.86E-04
14	GO:0009882: blue light photoreceptor activity	4.06E-04
15	GO:0042299: lupeol synthase activity	4.06E-04
16	GO:0009044: xylan 1,4-beta-xylosidase activity	5.42E-04
17	GO:0046556: alpha-L-arabinofuranosidase activity	5.42E-04
18	GO:0010011: auxin binding	5.42E-04
19	GO:0010328: auxin influx transmembrane transporter activity	5.42E-04
20	GO:0000156: phosphorelay response regulator activity	5.49E-04
21	GO:0008725: DNA-3-methyladenine glycosylase activity	6.87E-04
22	GO:2001070: starch binding	8.40E-04
23	GO:0005096: GTPase activator activity	9.34E-04
24	GO:0004124: cysteine synthase activity	9.99E-04
25	GO:0071949: FAD binding	1.73E-03
26	GO:0009672: auxin:proton symporter activity	1.93E-03
27	GO:0010329: auxin efflux transmembrane transporter activity	2.82E-03
28	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	3.56E-03
29	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	3.56E-03
30	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	3.56E-03
31	GO:0016829: lyase activity	3.63E-03
32	GO:0004857: enzyme inhibitor activity	3.81E-03
33	GO:0004812: aminoacyl-tRNA ligase activity	5.50E-03
34	GO:0042802: identical protein binding	5.86E-03
35	GO:0008536: Ran GTPase binding	6.11E-03
36	GO:0019901: protein kinase binding	6.74E-03
37	GO:0016762: xyloglucan:xyloglucosyl transferase activity	7.07E-03
38	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.02E-02
39	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.18E-02
40	GO:0004519: endonuclease activity	1.42E-02
41	GO:0035091: phosphatidylinositol binding	1.65E-02
42	GO:0015293: symporter activity	1.69E-02
43	GO:0015171: amino acid transmembrane transporter activity	2.07E-02
44	GO:0016740: transferase activity	2.84E-02
45	GO:0019843: rRNA binding	2.90E-02
46	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.07E-02
47	GO:0030170: pyridoxal phosphate binding	3.12E-02
48	GO:0046910: pectinesterase inhibitor activity	3.47E-02
49	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.32E-02
50	GO:0003723: RNA binding	4.74E-02
51	GO:0046982: protein heterodimerization activity	4.91E-02
52	GO:0004601: peroxidase activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0016605: PML body	2.81E-04
2	GO:0009986: cell surface	1.17E-03
3	GO:0016604: nuclear body	1.93E-03
4	GO:0009574: preprophase band	2.82E-03
5	GO:0009707: chloroplast outer membrane	1.10E-02
6	GO:0009507: chloroplast	2.45E-02