Gene: AT4G39620
Gene description
TAIR ID: AT4G39620
Short description: Tetratricopeptide repeat (TPR)-like superfamily protein
Pathogen responsiveness: -0.22
General responsiveness: -0.24
GO biological process
embryo development ending in seed dormancy, RNA modification
GO cellular component
chloroplast, intracellular membrane-bounded organelle
GO molecular function
endonuclease activity, RNA binding
Protein domain
| Pfam | PF13812, Pentatricopeptide repeat domain |
| Pfam | PF13041, PPR repeat family |
| Pfam | PF01535, PPR repeat |
Metabolic pathway
Not involved in metabolic pathway
KEGG pathway
Not involved in KEGG pathway
Protein-protein interaction network
No Interactor
Coexpression network
Differentially expressed condition 
19 conditions
| Series | Control | Treatment | Log2FC | Adj. P value |
|---|---|---|---|---|
| GSE17464 | Penta, control | Penta, Flg22 2 h | -1.92 | 5.65E-06 |
| GSE17464 | Penta, control | Penta, Flg22 2 h | -2.08 | 2.82E-06 |
| GSE18978 | Col, WT, control 24 h | Col, WT, PsmES4326 24 h | -1.88 | 2.41E-08 |
| GSE21920 | Col, WT, mock | Col, WT, Pto HopZ1a 6 h | -1.70 | 1.21E-06 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 12 h | -1.71 | 2.43E-12 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 4 h | -1.76 | 8.04E-12 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 8 h | -1.99 | 4.39E-13 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 4 h | -1.82 | 1.39E-12 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 8 h | -1.81 | 9.89E-13 |
| GSE45214 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 4 h | -1.76 | 1.90E-11 |
| GSE45214 | Col, med16, PstDC3000 AvrRpt2 0 h | Col, med16, PstDC3000 AvrRpt2 4 h | -2.02 | 7.25E-13 |
| GSE5520 | Col, WT, control 10 h | Col, WT, Cor- 10 h | -2.01 | 9.13E-03 |
| GSE5520 | Col, WT, control 7 h | Col, WT, PstDC3000 7 h | -2.21 | 7.95E-04 |
| GSE56094 | Col, WT, control 10 h | Col, WT, PstDC3000 10 h | -2.08 | 4.09E-18 |
| GSE56094 | Col, WT, control 11 h | Col, WT, PstDC3000 11 h | -1.92 | 8.26E-16 |
| GSE56094 | Col, WT, control 12 h | Col, WT, PstDC3000 12 h | -1.63 | 1.16E-12 |
| GSE56094 | Col, WT, control 13 h | Col, WT, PstDC3000 13 h | -1.60 | 1.46E-12 |
| GSE56094 | Col, WT, control 7 h | Col, WT, PstDC3000 7 h | -1.54 | 1.11E-10 |
| GSE56094 | Col, WT, control 8 h | Col, WT, PstDC3000 8 h | -1.90 | 2.16E-15 |
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