co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
2	GO:0044154: histone H3-K14 acetylation	0.00E+00
3	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
4	GO:0043972: histone H3-K23 acetylation	0.00E+00
5	GO:0046486: glycerolipid metabolic process	0.00E+00
6	GO:0009451: RNA modification	4.88E-05
7	GO:0090548: response to nitrate starvation	1.67E-04
8	GO:0051171: regulation of nitrogen compound metabolic process	1.67E-04
9	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	1.67E-04
10	GO:0043971: histone H3-K18 acetylation	1.67E-04
11	GO:1902025: nitrate import	1.67E-04
12	GO:0010480: microsporocyte differentiation	1.67E-04
13	GO:0090063: positive regulation of microtubule nucleation	1.67E-04
14	GO:0048229: gametophyte development	3.13E-04
15	GO:0043039: tRNA aminoacylation	3.78E-04
16	GO:0033566: gamma-tubulin complex localization	3.78E-04
17	GO:0006650: glycerophospholipid metabolic process	3.78E-04
18	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	3.78E-04
19	GO:0009220: pyrimidine ribonucleotide biosynthetic process	3.78E-04
20	GO:0080188: RNA-directed DNA methylation	5.19E-04
21	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	6.19E-04
22	GO:0046168: glycerol-3-phosphate catabolic process	6.19E-04
23	GO:0006013: mannose metabolic process	6.19E-04
24	GO:0042780: tRNA 3'-end processing	6.19E-04
25	GO:0045493: xylan catabolic process	6.19E-04
26	GO:0045017: glycerolipid biosynthetic process	8.83E-04
27	GO:0006072: glycerol-3-phosphate metabolic process	8.83E-04
28	GO:0009650: UV protection	8.83E-04
29	GO:0010255: glucose mediated signaling pathway	8.83E-04
30	GO:0044205: 'de novo' UMP biosynthetic process	1.17E-03
31	GO:0009956: radial pattern formation	1.17E-03
32	GO:0008654: phospholipid biosynthetic process	1.42E-03
33	GO:0009616: virus induced gene silencing	1.48E-03
34	GO:0071493: cellular response to UV-B	1.48E-03
35	GO:0016558: protein import into peroxisome matrix	1.48E-03
36	GO:0009959: negative gravitropism	1.83E-03
37	GO:0035194: posttranscriptional gene silencing by RNA	1.83E-03
38	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.83E-03
39	GO:0006655: phosphatidylglycerol biosynthetic process	1.83E-03
40	GO:0009639: response to red or far red light	1.83E-03
41	GO:0009088: threonine biosynthetic process	2.19E-03
42	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.19E-03
43	GO:0006401: RNA catabolic process	2.58E-03
44	GO:0009610: response to symbiotic fungus	2.58E-03
45	GO:0007050: cell cycle arrest	2.58E-03
46	GO:0048437: floral organ development	2.58E-03
47	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.58E-03
48	GO:0034968: histone lysine methylation	2.99E-03
49	GO:0048564: photosystem I assembly	2.99E-03
50	GO:0045292: mRNA cis splicing, via spliceosome	2.99E-03
51	GO:0044030: regulation of DNA methylation	3.41E-03
52	GO:0009056: catabolic process	3.86E-03
53	GO:0000373: Group II intron splicing	3.86E-03
54	GO:0010018: far-red light signaling pathway	4.33E-03
55	GO:0010380: regulation of chlorophyll biosynthetic process	4.33E-03
56	GO:0016571: histone methylation	4.33E-03
57	GO:0009926: auxin polar transport	4.61E-03
58	GO:0010192: mucilage biosynthetic process	4.81E-03
59	GO:0009793: embryo development ending in seed dormancy	5.05E-03
60	GO:1903507: negative regulation of nucleic acid-templated transcription	5.32E-03
61	GO:0016485: protein processing	5.32E-03
62	GO:0016024: CDP-diacylglycerol biosynthetic process	5.84E-03
63	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.05E-03
64	GO:0006364: rRNA processing	6.21E-03
65	GO:0010075: regulation of meristem growth	6.38E-03
66	GO:0010540: basipetal auxin transport	6.93E-03
67	GO:0009934: regulation of meristem structural organization	6.93E-03
68	GO:0009933: meristem structural organization	6.93E-03
69	GO:0009825: multidimensional cell growth	7.50E-03
70	GO:0009833: plant-type primary cell wall biogenesis	8.10E-03
71	GO:0042753: positive regulation of circadian rhythm	8.10E-03
72	GO:0009116: nucleoside metabolic process	8.70E-03
73	GO:0010187: negative regulation of seed germination	8.70E-03
74	GO:0006418: tRNA aminoacylation for protein translation	9.33E-03
75	GO:0006306: DNA methylation	9.97E-03
76	GO:0016226: iron-sulfur cluster assembly	1.06E-02
77	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.06E-02
78	GO:0042127: regulation of cell proliferation	1.20E-02
79	GO:0048653: anther development	1.34E-02
80	GO:0010051: xylem and phloem pattern formation	1.34E-02
81	GO:0048868: pollen tube development	1.41E-02
82	GO:0010305: leaf vascular tissue pattern formation	1.41E-02
83	GO:0009958: positive gravitropism	1.41E-02
84	GO:0080156: mitochondrial mRNA modification	1.64E-02
85	GO:0002229: defense response to oomycetes	1.64E-02
86	GO:0006635: fatty acid beta-oxidation	1.64E-02
87	GO:0010583: response to cyclopentenone	1.72E-02
88	GO:0031047: gene silencing by RNA	1.72E-02
89	GO:0009416: response to light stimulus	1.97E-02
90	GO:0016126: sterol biosynthetic process	2.13E-02
91	GO:0009627: systemic acquired resistance	2.30E-02
92	GO:0006974: cellular response to DNA damage stimulus	2.30E-02
93	GO:0009658: chloroplast organization	2.38E-02
94	GO:0010411: xyloglucan metabolic process	2.39E-02
95	GO:0005975: carbohydrate metabolic process	2.54E-02
96	GO:0030244: cellulose biosynthetic process	2.57E-02
97	GO:0009832: plant-type cell wall biogenesis	2.67E-02
98	GO:0009910: negative regulation of flower development	2.85E-02
99	GO:0009965: leaf morphogenesis	3.96E-02
100	GO:0031347: regulation of defense response	4.18E-02
101	GO:0016042: lipid catabolic process	4.21E-02
102	GO:0006629: lipid metabolic process	4.34E-02
103	GO:0009585: red, far-red light phototransduction	4.51E-02
104	GO:0006397: mRNA processing	4.52E-02
105	GO:0010224: response to UV-B	4.62E-02
106	GO:0008152: metabolic process	4.77E-02
107	GO:0006468: protein phosphorylation	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0008859: exoribonuclease II activity	0.00E+00
2	GO:0017046: peptide hormone binding	0.00E+00
3	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
4	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
5	GO:0004588: orotate phosphoribosyltransferase activity	0.00E+00
6	GO:0004590: orotidine-5'-phosphate decarboxylase activity	0.00E+00
7	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
8	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	1.67E-04
9	GO:0004831: tyrosine-tRNA ligase activity	1.67E-04
10	GO:0004795: threonine synthase activity	1.67E-04
11	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	1.67E-04
12	GO:0008327: methyl-CpG binding	3.13E-04
13	GO:0004047: aminomethyltransferase activity	3.78E-04
14	GO:0008805: carbon-monoxide oxygenase activity	3.78E-04
15	GO:0004519: endonuclease activity	4.54E-04
16	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	6.19E-04
17	GO:0010429: methyl-CpNpN binding	6.19E-04
18	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	6.19E-04
19	GO:0010428: methyl-CpNpG binding	6.19E-04
20	GO:0042781: 3'-tRNA processing endoribonuclease activity	6.19E-04
21	GO:0000254: C-4 methylsterol oxidase activity	8.83E-04
22	GO:0010385: double-stranded methylated DNA binding	1.17E-03
23	GO:0009044: xylan 1,4-beta-xylosidase activity	1.17E-03
24	GO:0042277: peptide binding	1.17E-03
25	GO:0046556: alpha-L-arabinofuranosidase activity	1.17E-03
26	GO:0004605: phosphatidate cytidylyltransferase activity	1.83E-03
27	GO:0004462: lactoylglutathione lyase activity	1.83E-03
28	GO:0004559: alpha-mannosidase activity	2.19E-03
29	GO:0004806: triglyceride lipase activity	2.56E-03
30	GO:0019899: enzyme binding	2.58E-03
31	GO:0003724: RNA helicase activity	3.41E-03
32	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	3.41E-03
33	GO:0042393: histone binding	4.08E-03
34	GO:0015020: glucuronosyltransferase activity	4.81E-03
35	GO:0043621: protein self-association	4.99E-03
36	GO:0009982: pseudouridine synthase activity	6.38E-03
37	GO:0000175: 3'-5'-exoribonuclease activity	6.38E-03
38	GO:0030246: carbohydrate binding	7.36E-03
39	GO:0004674: protein serine/threonine kinase activity	7.96E-03
40	GO:0080043: quercetin 3-O-glucosyltransferase activity	8.07E-03
41	GO:0080044: quercetin 7-O-glucosyltransferase activity	8.07E-03
42	GO:0003714: transcription corepressor activity	8.70E-03
43	GO:0004540: ribonuclease activity	9.97E-03
44	GO:0033612: receptor serine/threonine kinase binding	9.97E-03
45	GO:0016760: cellulose synthase (UDP-forming) activity	1.13E-02
46	GO:0030570: pectate lyase activity	1.13E-02
47	GO:0004812: aminoacyl-tRNA ligase activity	1.27E-02
48	GO:0018024: histone-lysine N-methyltransferase activity	1.27E-02
49	GO:0004402: histone acetyltransferase activity	1.34E-02
50	GO:0001085: RNA polymerase II transcription factor binding	1.41E-02
51	GO:0019901: protein kinase binding	1.56E-02
52	GO:0008194: UDP-glycosyltransferase activity	1.72E-02
53	GO:0016759: cellulose synthase activity	1.88E-02
54	GO:0008237: metallopeptidase activity	1.96E-02
55	GO:0003723: RNA binding	2.10E-02
56	GO:0046982: protein heterodimerization activity	2.33E-02
57	GO:0004222: metalloendopeptidase activity	2.76E-02
58	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.76E-02
59	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.79E-02
60	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.85E-02
61	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.85E-02
62	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.24E-02
63	GO:0052689: carboxylic ester hydrolase activity	3.26E-02
64	GO:0004871: signal transducer activity	3.69E-02
65	GO:0051287: NAD binding	4.18E-02
66	GO:0016301: kinase activity	4.57E-02
67	GO:0003777: microtubule motor activity	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	6.55E-05
2	GO:0010370: perinucleolar chromocenter	1.67E-04
3	GO:0009331: glycerol-3-phosphate dehydrogenase complex	8.83E-04
4	GO:0000930: gamma-tubulin complex	1.17E-03
5	GO:0000178: exosome (RNase complex)	1.48E-03
6	GO:0009505: plant-type cell wall	1.50E-03
7	GO:0042644: chloroplast nucleoid	3.86E-03
8	GO:0000922: spindle pole	3.86E-03
9	GO:0005720: nuclear heterochromatin	3.86E-03
10	GO:0055028: cortical microtubule	4.81E-03
11	GO:0005938: cell cortex	6.38E-03
12	GO:0016602: CCAAT-binding factor complex	6.38E-03
13	GO:0000419: DNA-directed RNA polymerase V complex	8.10E-03
14	GO:0000775: chromosome, centromeric region	1.06E-02
15	GO:0043231: intracellular membrane-bounded organelle	1.08E-02
16	GO:0009570: chloroplast stroma	1.46E-02
17	GO:0071944: cell periphery	1.80E-02
18	GO:0010319: stromule	1.96E-02
19	GO:0000932: P-body	2.13E-02
20	GO:0005667: transcription factor complex	2.30E-02
21	GO:0005819: spindle	3.24E-02
22	GO:0031977: thylakoid lumen	3.44E-02
23	GO:0005635: nuclear envelope	4.73E-02