co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
2	GO:0019685: photosynthesis, dark reaction	0.00E+00
3	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
4	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
5	GO:0009583: detection of light stimulus	0.00E+00
6	GO:0007037: vacuolar phosphate transport	0.00E+00
7	GO:0071000: response to magnetism	0.00E+00
8	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
9	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
10	GO:0006907: pinocytosis	0.00E+00
11	GO:0016123: xanthophyll biosynthetic process	3.16E-07
12	GO:0016120: carotene biosynthetic process	4.56E-05
13	GO:0009658: chloroplast organization	1.88E-04
14	GO:0048438: floral whorl development	1.95E-04
15	GO:0034970: histone H3-R2 methylation	1.95E-04
16	GO:0034972: histone H3-R26 methylation	1.95E-04
17	GO:0034971: histone H3-R17 methylation	1.95E-04
18	GO:0072387: flavin adenine dinucleotide metabolic process	1.95E-04
19	GO:0042371: vitamin K biosynthetic process	1.95E-04
20	GO:0071454: cellular response to anoxia	1.95E-04
21	GO:0071482: cellular response to light stimulus	1.98E-04
22	GO:0006352: DNA-templated transcription, initiation	3.91E-04
23	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	4.38E-04
24	GO:0080153: negative regulation of reductive pentose-phosphate cycle	4.38E-04
25	GO:0010024: phytochromobilin biosynthetic process	4.38E-04
26	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.38E-04
27	GO:0043039: tRNA aminoacylation	4.38E-04
28	GO:0010343: singlet oxygen-mediated programmed cell death	4.38E-04
29	GO:1901529: positive regulation of anion channel activity	4.38E-04
30	GO:0048255: mRNA stabilization	4.38E-04
31	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	4.38E-04
32	GO:0080005: photosystem stoichiometry adjustment	4.38E-04
33	GO:0010617: circadian regulation of calcium ion oscillation	4.38E-04
34	GO:0050688: regulation of defense response to virus	4.38E-04
35	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	4.38E-04
36	GO:0099402: plant organ development	4.38E-04
37	GO:0009451: RNA modification	5.92E-04
38	GO:1902448: positive regulation of shade avoidance	7.14E-04
39	GO:1901672: positive regulation of systemic acquired resistance	7.14E-04
40	GO:0009150: purine ribonucleotide metabolic process	7.14E-04
41	GO:0001578: microtubule bundle formation	7.14E-04
42	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.02E-03
43	GO:0090307: mitotic spindle assembly	1.02E-03
44	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	1.02E-03
45	GO:0033014: tetrapyrrole biosynthetic process	1.02E-03
46	GO:1901332: negative regulation of lateral root development	1.02E-03
47	GO:2001141: regulation of RNA biosynthetic process	1.02E-03
48	GO:0016226: iron-sulfur cluster assembly	1.04E-03
49	GO:0042274: ribosomal small subunit biogenesis	1.35E-03
50	GO:0051322: anaphase	1.35E-03
51	GO:0031935: regulation of chromatin silencing	1.35E-03
52	GO:0009765: photosynthesis, light harvesting	1.35E-03
53	GO:0007020: microtubule nucleation	1.35E-03
54	GO:0031122: cytoplasmic microtubule organization	1.35E-03
55	GO:0071483: cellular response to blue light	1.35E-03
56	GO:1902347: response to strigolactone	1.35E-03
57	GO:0008033: tRNA processing	1.42E-03
58	GO:0009958: positive gravitropism	1.53E-03
59	GO:0009616: virus induced gene silencing	1.72E-03
60	GO:0046785: microtubule polymerization	1.72E-03
61	GO:0010117: photoprotection	1.72E-03
62	GO:0046283: anthocyanin-containing compound metabolic process	1.72E-03
63	GO:1901371: regulation of leaf morphogenesis	2.12E-03
64	GO:0000741: karyogamy	2.12E-03
65	GO:0060918: auxin transport	2.12E-03
66	GO:0010019: chloroplast-nucleus signaling pathway	2.54E-03
67	GO:0010310: regulation of hydrogen peroxide metabolic process	2.54E-03
68	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.54E-03
69	GO:0010076: maintenance of floral meristem identity	2.54E-03
70	GO:0017148: negative regulation of translation	2.54E-03
71	GO:0000910: cytokinesis	2.56E-03
72	GO:0016126: sterol biosynthetic process	2.71E-03
73	GO:0006401: RNA catabolic process	3.00E-03
74	GO:0048528: post-embryonic root development	3.00E-03
75	GO:1900056: negative regulation of leaf senescence	3.00E-03
76	GO:0010050: vegetative phase change	3.00E-03
77	GO:0080111: DNA demethylation	3.00E-03
78	GO:0051510: regulation of unidimensional cell growth	3.00E-03
79	GO:0000105: histidine biosynthetic process	3.47E-03
80	GO:0048564: photosystem I assembly	3.47E-03
81	GO:0010928: regulation of auxin mediated signaling pathway	3.47E-03
82	GO:0042255: ribosome assembly	3.47E-03
83	GO:0006353: DNA-templated transcription, termination	3.47E-03
84	GO:0006402: mRNA catabolic process	3.47E-03
85	GO:0009704: de-etiolation	3.47E-03
86	GO:0022900: electron transport chain	3.97E-03
87	GO:0032544: plastid translation	3.97E-03
88	GO:0009910: negative regulation of flower development	4.08E-03
89	GO:0006098: pentose-phosphate shunt	4.49E-03
90	GO:0006783: heme biosynthetic process	4.49E-03
91	GO:1900426: positive regulation of defense response to bacterium	5.04E-03
92	GO:0009638: phototropism	5.04E-03
93	GO:0006779: porphyrin-containing compound biosynthetic process	5.04E-03
94	GO:0010380: regulation of chlorophyll biosynthetic process	5.04E-03
95	GO:0031425: chloroplast RNA processing	5.04E-03
96	GO:0010267: production of ta-siRNAs involved in RNA interference	5.04E-03
97	GO:0045036: protein targeting to chloroplast	5.61E-03
98	GO:0009870: defense response signaling pathway, resistance gene-dependent	5.61E-03
99	GO:0006535: cysteine biosynthetic process from serine	5.61E-03
100	GO:0009744: response to sucrose	5.76E-03
101	GO:0006790: sulfur compound metabolic process	6.81E-03
102	GO:0045037: protein import into chloroplast stroma	6.81E-03
103	GO:0010582: floral meristem determinacy	6.81E-03
104	GO:0010075: regulation of meristem growth	7.44E-03
105	GO:0009725: response to hormone	7.44E-03
106	GO:0006094: gluconeogenesis	7.44E-03
107	GO:0009767: photosynthetic electron transport chain	7.44E-03
108	GO:0009785: blue light signaling pathway	7.44E-03
109	GO:0006364: rRNA processing	7.75E-03
110	GO:0009793: embryo development ending in seed dormancy	7.84E-03
111	GO:0009266: response to temperature stimulus	8.10E-03
112	GO:0034605: cellular response to heat	8.10E-03
113	GO:0006541: glutamine metabolic process	8.10E-03
114	GO:0019253: reductive pentose-phosphate cycle	8.10E-03
115	GO:0046777: protein autophosphorylation	8.38E-03
116	GO:0090351: seedling development	8.77E-03
117	GO:0010025: wax biosynthetic process	9.46E-03
118	GO:0019344: cysteine biosynthetic process	1.02E-02
119	GO:0006289: nucleotide-excision repair	1.02E-02
120	GO:2000377: regulation of reactive oxygen species metabolic process	1.02E-02
121	GO:0006418: tRNA aminoacylation for protein translation	1.09E-02
122	GO:0043622: cortical microtubule organization	1.09E-02
123	GO:0007017: microtubule-based process	1.09E-02
124	GO:0080092: regulation of pollen tube growth	1.24E-02
125	GO:0006284: base-excision repair	1.40E-02
126	GO:0016117: carotenoid biosynthetic process	1.48E-02
127	GO:0070417: cellular response to cold	1.48E-02
128	GO:0010087: phloem or xylem histogenesis	1.57E-02
129	GO:0010118: stomatal movement	1.57E-02
130	GO:0010051: xylem and phloem pattern formation	1.57E-02
131	GO:0010197: polar nucleus fusion	1.65E-02
132	GO:0007018: microtubule-based movement	1.74E-02
133	GO:0042752: regulation of circadian rhythm	1.74E-02
134	GO:0009646: response to absence of light	1.74E-02
135	GO:0009791: post-embryonic development	1.83E-02
136	GO:0032502: developmental process	2.01E-02
137	GO:0010228: vegetative to reproductive phase transition of meristem	2.01E-02
138	GO:0007264: small GTPase mediated signal transduction	2.01E-02
139	GO:0016032: viral process	2.01E-02
140	GO:0051607: defense response to virus	2.40E-02
141	GO:0001666: response to hypoxia	2.50E-02
142	GO:0009816: defense response to bacterium, incompatible interaction	2.60E-02
143	GO:0015995: chlorophyll biosynthetic process	2.80E-02
144	GO:0018298: protein-chromophore linkage	3.02E-02
145	GO:0042254: ribosome biogenesis	3.03E-02
146	GO:0006811: ion transport	3.23E-02
147	GO:0010218: response to far red light	3.23E-02
148	GO:0007568: aging	3.34E-02
149	GO:0009637: response to blue light	3.57E-02
150	GO:0055114: oxidation-reduction process	3.88E-02
151	GO:0006897: endocytosis	4.03E-02
152	GO:0010114: response to red light	4.27E-02
153	GO:0009640: photomorphogenesis	4.27E-02
154	GO:0008283: cell proliferation	4.27E-02
155	GO:0009644: response to high light intensity	4.52E-02
156	GO:0009965: leaf morphogenesis	4.64E-02
157	GO:0006260: DNA replication	4.89E-02
158	GO:0000165: MAPK cascade	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0000107: imidazoleglycerol-phosphate synthase activity	0.00E+00
3	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
4	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
5	GO:0016833: oxo-acid-lyase activity	0.00E+00
6	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
7	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
8	GO:0001053: plastid sigma factor activity	2.82E-05
9	GO:0016987: sigma factor activity	2.82E-05
10	GO:0030941: chloroplast targeting sequence binding	1.95E-04
11	GO:0004654: polyribonucleotide nucleotidyltransferase activity	1.95E-04
12	GO:0004831: tyrosine-tRNA ligase activity	1.95E-04
13	GO:0004325: ferrochelatase activity	1.95E-04
14	GO:0071949: FAD binding	2.40E-04
15	GO:0004047: aminomethyltransferase activity	4.38E-04
16	GO:0035241: protein-arginine omega-N monomethyltransferase activity	4.38E-04
17	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	4.38E-04
18	GO:0050017: L-3-cyanoalanine synthase activity	4.38E-04
19	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	4.38E-04
20	GO:0008469: histone-arginine N-methyltransferase activity	7.14E-04
21	GO:0004180: carboxypeptidase activity	7.14E-04
22	GO:0032947: protein complex scaffold	7.14E-04
23	GO:0004848: ureidoglycolate hydrolase activity	7.14E-04
24	GO:0019003: GDP binding	7.14E-04
25	GO:0000900: translation repressor activity, nucleic acid binding	7.14E-04
26	GO:0016491: oxidoreductase activity	7.40E-04
27	GO:0043023: ribosomal large subunit binding	1.02E-03
28	GO:0000254: C-4 methylsterol oxidase activity	1.02E-03
29	GO:0009882: blue light photoreceptor activity	1.02E-03
30	GO:0047627: adenylylsulfatase activity	1.02E-03
31	GO:0003777: microtubule motor activity	1.23E-03
32	GO:0051861: glycolipid binding	1.35E-03
33	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.35E-03
34	GO:0043015: gamma-tubulin binding	1.35E-03
35	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.35E-03
36	GO:0010181: FMN binding	1.65E-03
37	GO:0008374: O-acyltransferase activity	1.72E-03
38	GO:0051011: microtubule minus-end binding	1.72E-03
39	GO:0048038: quinone binding	1.89E-03
40	GO:0004518: nuclease activity	2.01E-03
41	GO:0004332: fructose-bisphosphate aldolase activity	2.12E-03
42	GO:0003723: RNA binding	2.17E-03
43	GO:0019843: rRNA binding	2.24E-03
44	GO:0004124: cysteine synthase activity	2.54E-03
45	GO:0015631: tubulin binding	2.54E-03
46	GO:0004519: endonuclease activity	3.13E-03
47	GO:0008017: microtubule binding	3.56E-03
48	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.20E-03
49	GO:0000175: 3'-5'-exoribonuclease activity	7.44E-03
50	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	7.75E-03
51	GO:0003690: double-stranded DNA binding	8.03E-03
52	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.10E-03
53	GO:0016740: transferase activity	8.91E-03
54	GO:0003887: DNA-directed DNA polymerase activity	9.46E-03
55	GO:0051536: iron-sulfur cluster binding	1.02E-02
56	GO:0003727: single-stranded RNA binding	1.40E-02
57	GO:0004812: aminoacyl-tRNA ligase activity	1.48E-02
58	GO:0004872: receptor activity	1.83E-02
59	GO:0008483: transaminase activity	2.30E-02
60	GO:0005200: structural constituent of cytoskeleton	2.30E-02
61	GO:0008168: methyltransferase activity	2.86E-02
62	GO:0008236: serine-type peptidase activity	2.91E-02
63	GO:0005096: GTPase activator activity	3.12E-02
64	GO:0050897: cobalt ion binding	3.34E-02
65	GO:0003746: translation elongation factor activity	3.57E-02
66	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.80E-02
67	GO:0004185: serine-type carboxypeptidase activity	4.27E-02
68	GO:0051537: 2 iron, 2 sulfur cluster binding	4.52E-02
69	GO:0035091: phosphatidylinositol binding	4.52E-02
70	GO:0042803: protein homodimerization activity	4.60E-02
71	GO:0005198: structural molecule activity	4.64E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	6.58E-14
3	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.55E-06
4	GO:0009570: chloroplast stroma	1.58E-04
5	GO:0009535: chloroplast thylakoid membrane	2.09E-04
6	GO:0008274: gamma-tubulin ring complex	4.38E-04
7	GO:0005819: spindle	6.07E-04
8	GO:0016605: PML body	7.14E-04
9	GO:0000923: equatorial microtubule organizing center	1.02E-03
10	GO:0030286: dynein complex	1.35E-03
11	GO:0005874: microtubule	1.45E-03
12	GO:0055035: plastid thylakoid membrane	1.72E-03
13	GO:0072686: mitotic spindle	1.72E-03
14	GO:0030140: trans-Golgi network transport vesicle	2.12E-03
15	GO:0009536: plastid	2.25E-03
16	GO:0010005: cortical microtubule, transverse to long axis	2.54E-03
17	GO:0009840: chloroplastic endopeptidase Clp complex	2.54E-03
18	GO:0005655: nucleolar ribonuclease P complex	2.54E-03
19	GO:0000123: histone acetyltransferase complex	3.00E-03
20	GO:0031359: integral component of chloroplast outer membrane	3.00E-03
21	GO:0046930: pore complex	3.97E-03
22	GO:0000922: spindle pole	4.49E-03
23	GO:0016604: nuclear body	5.04E-03
24	GO:0055028: cortical microtubule	5.61E-03
25	GO:0016324: apical plasma membrane	5.61E-03
26	GO:0048471: perinuclear region of cytoplasm	6.20E-03
27	GO:0005938: cell cortex	7.44E-03
28	GO:0009574: preprophase band	7.44E-03
29	GO:0043234: protein complex	9.46E-03
30	GO:0005875: microtubule associated complex	9.46E-03
31	GO:0042651: thylakoid membrane	1.09E-02
32	GO:0005871: kinesin complex	1.48E-02
33	GO:0009707: chloroplast outer membrane	3.02E-02
34	GO:0031969: chloroplast membrane	3.68E-02