GO Enrichment Analysis of Co-expressed Genes with
AT4G39620
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 2 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 3 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 4 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 5 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 6 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 7 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 8 | GO:0006642: triglyceride mobilization | 0.00E+00 |
| 9 | GO:0006223: uracil salvage | 0.00E+00 |
| 10 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 11 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 12 | GO:0006412: translation | 9.01E-20 |
| 13 | GO:0015979: photosynthesis | 4.80E-14 |
| 14 | GO:0042254: ribosome biogenesis | 7.51E-11 |
| 15 | GO:0032544: plastid translation | 5.58E-10 |
| 16 | GO:0009735: response to cytokinin | 1.69E-09 |
| 17 | GO:0015995: chlorophyll biosynthetic process | 1.87E-09 |
| 18 | GO:0009658: chloroplast organization | 5.72E-06 |
| 19 | GO:0010236: plastoquinone biosynthetic process | 7.01E-05 |
| 20 | GO:0045454: cell redox homeostasis | 1.49E-04 |
| 21 | GO:0010196: nonphotochemical quenching | 1.85E-04 |
| 22 | GO:0000413: protein peptidyl-prolyl isomerization | 1.89E-04 |
| 23 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.53E-04 |
| 24 | GO:0046166: glyceraldehyde-3-phosphate biosynthetic process | 2.53E-04 |
| 25 | GO:0043489: RNA stabilization | 2.53E-04 |
| 26 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.53E-04 |
| 27 | GO:1904964: positive regulation of phytol biosynthetic process | 2.53E-04 |
| 28 | GO:0042371: vitamin K biosynthetic process | 2.53E-04 |
| 29 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.16E-04 |
| 30 | GO:0010027: thylakoid membrane organization | 4.57E-04 |
| 31 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.86E-04 |
| 32 | GO:0010024: phytochromobilin biosynthetic process | 5.59E-04 |
| 33 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.59E-04 |
| 34 | GO:0006568: tryptophan metabolic process | 5.59E-04 |
| 35 | GO:0043085: positive regulation of catalytic activity | 5.62E-04 |
| 36 | GO:0006006: glucose metabolic process | 7.28E-04 |
| 37 | GO:0010020: chloroplast fission | 8.19E-04 |
| 38 | GO:0010207: photosystem II assembly | 8.19E-04 |
| 39 | GO:0019253: reductive pentose-phosphate cycle | 8.19E-04 |
| 40 | GO:0010581: regulation of starch biosynthetic process | 9.07E-04 |
| 41 | GO:0006788: heme oxidation | 9.07E-04 |
| 42 | GO:0090391: granum assembly | 9.07E-04 |
| 43 | GO:0019563: glycerol catabolic process | 9.07E-04 |
| 44 | GO:0006518: peptide metabolic process | 9.07E-04 |
| 45 | GO:0071492: cellular response to UV-A | 9.07E-04 |
| 46 | GO:2001295: malonyl-CoA biosynthetic process | 9.07E-04 |
| 47 | GO:0032504: multicellular organism reproduction | 9.07E-04 |
| 48 | GO:0042742: defense response to bacterium | 9.23E-04 |
| 49 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.29E-03 |
| 50 | GO:0006241: CTP biosynthetic process | 1.29E-03 |
| 51 | GO:0006165: nucleoside diphosphate phosphorylation | 1.29E-03 |
| 52 | GO:0006228: UTP biosynthetic process | 1.29E-03 |
| 53 | GO:0010088: phloem development | 1.29E-03 |
| 54 | GO:0006424: glutamyl-tRNA aminoacylation | 1.29E-03 |
| 55 | GO:1901332: negative regulation of lateral root development | 1.29E-03 |
| 56 | GO:0006986: response to unfolded protein | 1.29E-03 |
| 57 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.29E-03 |
| 58 | GO:2001141: regulation of RNA biosynthetic process | 1.29E-03 |
| 59 | GO:0061077: chaperone-mediated protein folding | 1.35E-03 |
| 60 | GO:0071486: cellular response to high light intensity | 1.73E-03 |
| 61 | GO:0006183: GTP biosynthetic process | 1.73E-03 |
| 62 | GO:2000122: negative regulation of stomatal complex development | 1.73E-03 |
| 63 | GO:0044206: UMP salvage | 1.73E-03 |
| 64 | GO:0010037: response to carbon dioxide | 1.73E-03 |
| 65 | GO:0006808: regulation of nitrogen utilization | 1.73E-03 |
| 66 | GO:0015976: carbon utilization | 1.73E-03 |
| 67 | GO:0042335: cuticle development | 2.05E-03 |
| 68 | GO:0006096: glycolytic process | 2.13E-03 |
| 69 | GO:0043097: pyrimidine nucleoside salvage | 2.21E-03 |
| 70 | GO:0032543: mitochondrial translation | 2.21E-03 |
| 71 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.72E-03 |
| 72 | GO:0006206: pyrimidine nucleobase metabolic process | 2.72E-03 |
| 73 | GO:0032973: amino acid export | 2.72E-03 |
| 74 | GO:0010190: cytochrome b6f complex assembly | 2.72E-03 |
| 75 | GO:0006014: D-ribose metabolic process | 2.72E-03 |
| 76 | GO:0042549: photosystem II stabilization | 2.72E-03 |
| 77 | GO:0042372: phylloquinone biosynthetic process | 3.27E-03 |
| 78 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.27E-03 |
| 79 | GO:0010189: vitamin E biosynthetic process | 3.27E-03 |
| 80 | GO:0009854: oxidative photosynthetic carbon pathway | 3.27E-03 |
| 81 | GO:0010019: chloroplast-nucleus signaling pathway | 3.27E-03 |
| 82 | GO:0010555: response to mannitol | 3.27E-03 |
| 83 | GO:0009772: photosynthetic electron transport in photosystem II | 3.86E-03 |
| 84 | GO:0043090: amino acid import | 3.86E-03 |
| 85 | GO:0006400: tRNA modification | 3.86E-03 |
| 86 | GO:0048564: photosystem I assembly | 4.48E-03 |
| 87 | GO:0009642: response to light intensity | 4.48E-03 |
| 88 | GO:0006605: protein targeting | 4.48E-03 |
| 89 | GO:0006633: fatty acid biosynthetic process | 4.79E-03 |
| 90 | GO:0006457: protein folding | 4.83E-03 |
| 91 | GO:0009817: defense response to fungus, incompatible interaction | 5.11E-03 |
| 92 | GO:0018298: protein-chromophore linkage | 5.11E-03 |
| 93 | GO:0071482: cellular response to light stimulus | 5.13E-03 |
| 94 | GO:0009657: plastid organization | 5.13E-03 |
| 95 | GO:0019430: removal of superoxide radicals | 5.13E-03 |
| 96 | GO:0009051: pentose-phosphate shunt, oxidative branch | 5.81E-03 |
| 97 | GO:0010206: photosystem II repair | 5.81E-03 |
| 98 | GO:0080144: amino acid homeostasis | 5.81E-03 |
| 99 | GO:0009631: cold acclimation | 5.91E-03 |
| 100 | GO:0009637: response to blue light | 6.48E-03 |
| 101 | GO:0010380: regulation of chlorophyll biosynthetic process | 6.52E-03 |
| 102 | GO:0034599: cellular response to oxidative stress | 6.77E-03 |
| 103 | GO:0048829: root cap development | 7.26E-03 |
| 104 | GO:0009773: photosynthetic electron transport in photosystem I | 8.04E-03 |
| 105 | GO:0006352: DNA-templated transcription, initiation | 8.04E-03 |
| 106 | GO:0018119: peptidyl-cysteine S-nitrosylation | 8.04E-03 |
| 107 | GO:0010114: response to red light | 8.35E-03 |
| 108 | GO:0006790: sulfur compound metabolic process | 8.83E-03 |
| 109 | GO:2000012: regulation of auxin polar transport | 9.66E-03 |
| 110 | GO:0006094: gluconeogenesis | 9.66E-03 |
| 111 | GO:0010143: cutin biosynthetic process | 1.05E-02 |
| 112 | GO:0046854: phosphatidylinositol phosphorylation | 1.14E-02 |
| 113 | GO:0019344: cysteine biosynthetic process | 1.32E-02 |
| 114 | GO:0009116: nucleoside metabolic process | 1.32E-02 |
| 115 | GO:0000027: ribosomal large subunit assembly | 1.32E-02 |
| 116 | GO:0006418: tRNA aminoacylation for protein translation | 1.42E-02 |
| 117 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.42E-02 |
| 118 | GO:0003333: amino acid transmembrane transport | 1.52E-02 |
| 119 | GO:0009793: embryo development ending in seed dormancy | 1.62E-02 |
| 120 | GO:0009411: response to UV | 1.72E-02 |
| 121 | GO:0009409: response to cold | 1.77E-02 |
| 122 | GO:0009306: protein secretion | 1.83E-02 |
| 123 | GO:0016042: lipid catabolic process | 1.96E-02 |
| 124 | GO:0080022: primary root development | 2.05E-02 |
| 125 | GO:0006662: glycerol ether metabolic process | 2.16E-02 |
| 126 | GO:0007018: microtubule-based movement | 2.27E-02 |
| 127 | GO:0008152: metabolic process | 2.29E-02 |
| 128 | GO:0042744: hydrogen peroxide catabolic process | 2.30E-02 |
| 129 | GO:0009790: embryo development | 2.36E-02 |
| 130 | GO:0019252: starch biosynthetic process | 2.39E-02 |
| 131 | GO:0000302: response to reactive oxygen species | 2.51E-02 |
| 132 | GO:0032502: developmental process | 2.63E-02 |
| 133 | GO:0030163: protein catabolic process | 2.75E-02 |
| 134 | GO:0055114: oxidation-reduction process | 3.06E-02 |
| 135 | GO:0009734: auxin-activated signaling pathway | 3.11E-02 |
| 136 | GO:0009627: systemic acquired resistance | 3.52E-02 |
| 137 | GO:0048481: plant ovule development | 3.93E-02 |
| 138 | GO:0010311: lateral root formation | 4.08E-02 |
| 139 | GO:0010218: response to far red light | 4.22E-02 |
| 140 | GO:0010119: regulation of stomatal movement | 4.36E-02 |
| 141 | GO:0006865: amino acid transport | 4.51E-02 |
| 142 | GO:0009853: photorespiration | 4.66E-02 |
| 143 | GO:0045087: innate immune response | 4.66E-02 |
| 144 | GO:0016051: carbohydrate biosynthetic process | 4.66E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 2 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 3 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 4 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 5 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 6 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 7 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 8 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 9 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 10 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 11 | GO:0019843: rRNA binding | 2.69E-24 |
| 12 | GO:0003735: structural constituent of ribosome | 1.00E-21 |
| 13 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.52E-14 |
| 14 | GO:0005528: FK506 binding | 5.83E-12 |
| 15 | GO:0051920: peroxiredoxin activity | 2.10E-06 |
| 16 | GO:0016209: antioxidant activity | 5.16E-06 |
| 17 | GO:0016851: magnesium chelatase activity | 2.42E-05 |
| 18 | GO:0004659: prenyltransferase activity | 4.39E-05 |
| 19 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 2.53E-04 |
| 20 | GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | 2.53E-04 |
| 21 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 2.53E-04 |
| 22 | GO:0004807: triose-phosphate isomerase activity | 2.53E-04 |
| 23 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 2.53E-04 |
| 24 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.53E-04 |
| 25 | GO:0008047: enzyme activator activity | 4.86E-04 |
| 26 | GO:0016168: chlorophyll binding | 4.92E-04 |
| 27 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 5.59E-04 |
| 28 | GO:0016630: protochlorophyllide reductase activity | 5.59E-04 |
| 29 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 5.59E-04 |
| 30 | GO:0008266: poly(U) RNA binding | 8.19E-04 |
| 31 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 9.07E-04 |
| 32 | GO:0017150: tRNA dihydrouridine synthase activity | 9.07E-04 |
| 33 | GO:0050734: hydroxycinnamoyltransferase activity | 9.07E-04 |
| 34 | GO:0002161: aminoacyl-tRNA editing activity | 9.07E-04 |
| 35 | GO:0004075: biotin carboxylase activity | 9.07E-04 |
| 36 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 9.07E-04 |
| 37 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 9.07E-04 |
| 38 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 1.29E-03 |
| 39 | GO:0004550: nucleoside diphosphate kinase activity | 1.29E-03 |
| 40 | GO:0043023: ribosomal large subunit binding | 1.29E-03 |
| 41 | GO:0008097: 5S rRNA binding | 1.29E-03 |
| 42 | GO:0022891: substrate-specific transmembrane transporter activity | 1.61E-03 |
| 43 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.73E-03 |
| 44 | GO:0016836: hydro-lyase activity | 1.73E-03 |
| 45 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 1.73E-03 |
| 46 | GO:0016987: sigma factor activity | 1.73E-03 |
| 47 | GO:0010328: auxin influx transmembrane transporter activity | 1.73E-03 |
| 48 | GO:0043495: protein anchor | 1.73E-03 |
| 49 | GO:0004392: heme oxygenase (decyclizing) activity | 1.73E-03 |
| 50 | GO:0001053: plastid sigma factor activity | 1.73E-03 |
| 51 | GO:0004845: uracil phosphoribosyltransferase activity | 1.73E-03 |
| 52 | GO:0016788: hydrolase activity, acting on ester bonds | 1.99E-03 |
| 53 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.21E-03 |
| 54 | GO:0003959: NADPH dehydrogenase activity | 2.21E-03 |
| 55 | GO:0004040: amidase activity | 2.21E-03 |
| 56 | GO:0003989: acetyl-CoA carboxylase activity | 2.21E-03 |
| 57 | GO:0004791: thioredoxin-disulfide reductase activity | 2.37E-03 |
| 58 | GO:0005509: calcium ion binding | 2.70E-03 |
| 59 | GO:0004130: cytochrome-c peroxidase activity | 2.72E-03 |
| 60 | GO:0016688: L-ascorbate peroxidase activity | 2.72E-03 |
| 61 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 3.09E-03 |
| 62 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 3.27E-03 |
| 63 | GO:0004747: ribokinase activity | 3.27E-03 |
| 64 | GO:0004849: uridine kinase activity | 3.27E-03 |
| 65 | GO:0016831: carboxy-lyase activity | 3.86E-03 |
| 66 | GO:0019899: enzyme binding | 3.86E-03 |
| 67 | GO:0004033: aldo-keto reductase (NADP) activity | 4.48E-03 |
| 68 | GO:0008865: fructokinase activity | 4.48E-03 |
| 69 | GO:0016491: oxidoreductase activity | 5.44E-03 |
| 70 | GO:0004222: metalloendopeptidase activity | 5.63E-03 |
| 71 | GO:0047617: acyl-CoA hydrolase activity | 6.52E-03 |
| 72 | GO:0050661: NADP binding | 7.38E-03 |
| 73 | GO:0000049: tRNA binding | 8.83E-03 |
| 74 | GO:0004601: peroxidase activity | 9.41E-03 |
| 75 | GO:0004089: carbonate dehydratase activity | 9.66E-03 |
| 76 | GO:0031409: pigment binding | 1.23E-02 |
| 77 | GO:0015171: amino acid transmembrane transporter activity | 1.25E-02 |
| 78 | GO:0052689: carboxylic ester hydrolase activity | 1.41E-02 |
| 79 | GO:0051087: chaperone binding | 1.42E-02 |
| 80 | GO:0004176: ATP-dependent peptidase activity | 1.52E-02 |
| 81 | GO:0047134: protein-disulfide reductase activity | 1.94E-02 |
| 82 | GO:0004812: aminoacyl-tRNA ligase activity | 1.94E-02 |
| 83 | GO:0008080: N-acetyltransferase activity | 2.16E-02 |
| 84 | GO:0050662: coenzyme binding | 2.27E-02 |
| 85 | GO:0008483: transaminase activity | 3.00E-02 |
| 86 | GO:0008237: metallopeptidase activity | 3.00E-02 |
| 87 | GO:0016887: ATPase activity | 3.50E-02 |
| 88 | GO:0042802: identical protein binding | 3.54E-02 |
| 89 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 3.80E-02 |
| 90 | GO:0008236: serine-type peptidase activity | 3.80E-02 |
| 91 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.93E-02 |
| 92 | GO:0003746: translation elongation factor activity | 4.66E-02 |
| 93 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 3.54E-87 |
| 4 | GO:0009570: chloroplast stroma | 1.36E-77 |
| 5 | GO:0009941: chloroplast envelope | 3.89E-57 |
| 6 | GO:0009579: thylakoid | 7.43E-38 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 1.23E-32 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 4.34E-26 |
| 9 | GO:0031977: thylakoid lumen | 1.92E-24 |
| 10 | GO:0009534: chloroplast thylakoid | 2.93E-21 |
| 11 | GO:0005840: ribosome | 2.98E-21 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 7.78E-10 |
| 13 | GO:0019898: extrinsic component of membrane | 9.96E-09 |
| 14 | GO:0010007: magnesium chelatase complex | 1.07E-05 |
| 15 | GO:0000311: plastid large ribosomal subunit | 3.00E-05 |
| 16 | GO:0030095: chloroplast photosystem II | 4.53E-05 |
| 17 | GO:0000312: plastid small ribosomal subunit | 4.53E-05 |
| 18 | GO:0042651: thylakoid membrane | 8.85E-05 |
| 19 | GO:0009533: chloroplast stromal thylakoid | 1.85E-04 |
| 20 | GO:0009515: granal stacked thylakoid | 2.53E-04 |
| 21 | GO:0009547: plastid ribosome | 2.53E-04 |
| 22 | GO:0010319: stromule | 3.93E-04 |
| 23 | GO:0031969: chloroplast membrane | 5.67E-04 |
| 24 | GO:0048046: apoplast | 7.54E-04 |
| 25 | GO:0015934: large ribosomal subunit | 7.70E-04 |
| 26 | GO:0016020: membrane | 1.16E-03 |
| 27 | GO:0015935: small ribosomal subunit | 1.35E-03 |
| 28 | GO:0009536: plastid | 1.44E-03 |
| 29 | GO:0009523: photosystem II | 2.54E-03 |
| 30 | GO:0009706: chloroplast inner membrane | 2.69E-03 |
| 31 | GO:0022626: cytosolic ribosome | 2.84E-03 |
| 32 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.81E-03 |
| 33 | GO:0022627: cytosolic small ribosomal subunit | 7.71E-03 |
| 34 | GO:0090404: pollen tube tip | 8.04E-03 |
| 35 | GO:0030076: light-harvesting complex | 1.14E-02 |
| 36 | GO:0022625: cytosolic large ribosomal subunit | 1.32E-02 |
| 37 | GO:0009532: plastid stroma | 1.52E-02 |
| 38 | GO:0010287: plastoglobule | 1.91E-02 |
| 39 | GO:0005871: kinesin complex | 1.94E-02 |
| 40 | GO:0009522: photosystem I | 2.27E-02 |
| 41 | GO:0009295: nucleoid | 3.00E-02 |
| 42 | GO:0030529: intracellular ribonucleoprotein complex | 3.26E-02 |