co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
5	GO:0042821: pyridoxal biosynthetic process	0.00E+00
6	GO:0060416: response to growth hormone	0.00E+00
7	GO:0097164: ammonium ion metabolic process	0.00E+00
8	GO:0042820: vitamin B6 catabolic process	0.00E+00
9	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
10	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
11	GO:0006399: tRNA metabolic process	0.00E+00
12	GO:0070125: mitochondrial translational elongation	0.00E+00
13	GO:0034337: RNA folding	0.00E+00
14	GO:0006412: translation	2.64E-16
15	GO:0032544: plastid translation	8.26E-14
16	GO:0042254: ribosome biogenesis	9.51E-11
17	GO:0009658: chloroplast organization	2.28E-08
18	GO:1901259: chloroplast rRNA processing	5.68E-06
19	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.25E-06
20	GO:0009793: embryo development ending in seed dormancy	3.09E-05
21	GO:0009767: photosynthetic electron transport chain	8.89E-05
22	GO:0010027: thylakoid membrane organization	1.04E-04
23	GO:0010207: photosystem II assembly	1.07E-04
24	GO:0045038: protein import into chloroplast thylakoid membrane	1.32E-04
25	GO:0009735: response to cytokinin	1.37E-04
26	GO:0015995: chlorophyll biosynthetic process	1.40E-04
27	GO:0042549: photosystem II stabilization	1.90E-04
28	GO:0042372: phylloquinone biosynthetic process	2.57E-04
29	GO:0009772: photosynthetic electron transport in photosystem II	3.33E-04
30	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.73E-04
31	GO:0006434: seryl-tRNA aminoacylation	3.73E-04
32	GO:0000476: maturation of 4.5S rRNA	3.73E-04
33	GO:0009443: pyridoxal 5'-phosphate salvage	3.73E-04
34	GO:0000967: rRNA 5'-end processing	3.73E-04
35	GO:0006438: valyl-tRNA aminoacylation	3.73E-04
36	GO:0009090: homoserine biosynthetic process	3.73E-04
37	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	3.73E-04
38	GO:1904966: positive regulation of vitamin E biosynthetic process	3.73E-04
39	GO:0000481: maturation of 5S rRNA	3.73E-04
40	GO:1904964: positive regulation of phytol biosynthetic process	3.73E-04
41	GO:0042371: vitamin K biosynthetic process	3.73E-04
42	GO:1902458: positive regulation of stomatal opening	3.73E-04
43	GO:0000413: protein peptidyl-prolyl isomerization	4.05E-04
44	GO:0015979: photosynthesis	4.70E-04
45	GO:0071482: cellular response to light stimulus	5.11E-04
46	GO:0010206: photosystem II repair	6.13E-04
47	GO:0034470: ncRNA processing	8.10E-04
48	GO:0043039: tRNA aminoacylation	8.10E-04
49	GO:0070981: L-asparagine biosynthetic process	8.10E-04
50	GO:0018026: peptidyl-lysine monomethylation	8.10E-04
51	GO:1904143: positive regulation of carotenoid biosynthetic process	8.10E-04
52	GO:0080148: negative regulation of response to water deprivation	8.10E-04
53	GO:0006529: asparagine biosynthetic process	8.10E-04
54	GO:1903426: regulation of reactive oxygen species biosynthetic process	8.10E-04
55	GO:0019684: photosynthesis, light reaction	9.70E-04
56	GO:0009773: photosynthetic electron transport in photosystem I	9.70E-04
57	GO:0009089: lysine biosynthetic process via diaminopimelate	9.70E-04
58	GO:0006352: DNA-templated transcription, initiation	9.70E-04
59	GO:0006954: inflammatory response	1.31E-03
60	GO:0006518: peptide metabolic process	1.31E-03
61	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.31E-03
62	GO:0090351: seedling development	1.58E-03
63	GO:0006636: unsaturated fatty acid biosynthetic process	1.76E-03
64	GO:0009790: embryo development	1.85E-03
65	GO:0006241: CTP biosynthetic process	1.89E-03
66	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.89E-03
67	GO:0006165: nucleoside diphosphate phosphorylation	1.89E-03
68	GO:0006424: glutamyl-tRNA aminoacylation	1.89E-03
69	GO:0006228: UTP biosynthetic process	1.89E-03
70	GO:0016556: mRNA modification	1.89E-03
71	GO:0055070: copper ion homeostasis	1.89E-03
72	GO:2001141: regulation of RNA biosynthetic process	1.89E-03
73	GO:0009067: aspartate family amino acid biosynthetic process	1.89E-03
74	GO:0006183: GTP biosynthetic process	2.54E-03
75	GO:2000122: negative regulation of stomatal complex development	2.54E-03
76	GO:0006749: glutathione metabolic process	2.54E-03
77	GO:0071483: cellular response to blue light	2.54E-03
78	GO:0010037: response to carbon dioxide	2.54E-03
79	GO:0015976: carbon utilization	2.54E-03
80	GO:0009306: protein secretion	3.07E-03
81	GO:0009247: glycolipid biosynthetic process	3.25E-03
82	GO:0032543: mitochondrial translation	3.25E-03
83	GO:0006564: L-serine biosynthetic process	3.25E-03
84	GO:0010236: plastoquinone biosynthetic process	3.25E-03
85	GO:0035434: copper ion transmembrane transport	3.25E-03
86	GO:0009741: response to brassinosteroid	3.88E-03
87	GO:0016554: cytidine to uridine editing	4.02E-03
88	GO:0006655: phosphatidylglycerol biosynthetic process	4.02E-03
89	GO:0010190: cytochrome b6f complex assembly	4.02E-03
90	GO:0032973: amino acid export	4.02E-03
91	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.02E-03
92	GO:0006354: DNA-templated transcription, elongation	4.02E-03
93	GO:0010405: arabinogalactan protein metabolic process	4.02E-03
94	GO:0009646: response to absence of light	4.18E-03
95	GO:0009955: adaxial/abaxial pattern specification	4.85E-03
96	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.85E-03
97	GO:0009854: oxidative photosynthetic carbon pathway	4.85E-03
98	GO:0009088: threonine biosynthetic process	4.85E-03
99	GO:0010019: chloroplast-nucleus signaling pathway	4.85E-03
100	GO:0032502: developmental process	5.12E-03
101	GO:0009395: phospholipid catabolic process	5.73E-03
102	GO:0043090: amino acid import	5.73E-03
103	GO:0006821: chloride transport	5.73E-03
104	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.73E-03
105	GO:0010444: guard mother cell differentiation	5.73E-03
106	GO:0009409: response to cold	6.31E-03
107	GO:0048564: photosystem I assembly	6.65E-03
108	GO:0042255: ribosome assembly	6.65E-03
109	GO:0006353: DNA-templated transcription, termination	6.65E-03
110	GO:0006605: protein targeting	6.65E-03
111	GO:0019375: galactolipid biosynthetic process	6.65E-03
112	GO:0010078: maintenance of root meristem identity	6.65E-03
113	GO:0009704: de-etiolation	6.65E-03
114	GO:0032508: DNA duplex unwinding	6.65E-03
115	GO:2000070: regulation of response to water deprivation	6.65E-03
116	GO:0009657: plastid organization	7.64E-03
117	GO:0043562: cellular response to nitrogen levels	7.64E-03
118	GO:0017004: cytochrome complex assembly	7.64E-03
119	GO:0042128: nitrate assimilation	7.76E-03
120	GO:0009821: alkaloid biosynthetic process	8.66E-03
121	GO:0080144: amino acid homeostasis	8.66E-03
122	GO:0006783: heme biosynthetic process	8.66E-03
123	GO:0018298: protein-chromophore linkage	9.07E-03
124	GO:0010205: photoinhibition	9.74E-03
125	GO:0009086: methionine biosynthetic process	9.74E-03
126	GO:1900865: chloroplast RNA modification	9.74E-03
127	GO:0048527: lateral root development	1.05E-02
128	GO:0006782: protoporphyrinogen IX biosynthetic process	1.09E-02
129	GO:0006535: cysteine biosynthetic process from serine	1.09E-02
130	GO:0043069: negative regulation of programmed cell death	1.09E-02
131	GO:0009853: photorespiration	1.15E-02
132	GO:0009637: response to blue light	1.15E-02
133	GO:0009073: aromatic amino acid family biosynthetic process	1.20E-02
134	GO:0006415: translational termination	1.20E-02
135	GO:0018119: peptidyl-cysteine S-nitrosylation	1.20E-02
136	GO:0009684: indoleacetic acid biosynthetic process	1.20E-02
137	GO:0006457: protein folding	1.32E-02
138	GO:0030001: metal ion transport	1.32E-02
139	GO:0016024: CDP-diacylglycerol biosynthetic process	1.33E-02
140	GO:0045037: protein import into chloroplast stroma	1.33E-02
141	GO:0010588: cotyledon vascular tissue pattern formation	1.45E-02
142	GO:0030048: actin filament-based movement	1.45E-02
143	GO:0010628: positive regulation of gene expression	1.45E-02
144	GO:0050826: response to freezing	1.45E-02
145	GO:0010114: response to red light	1.49E-02
146	GO:0048467: gynoecium development	1.58E-02
147	GO:0006541: glutamine metabolic process	1.58E-02
148	GO:0010020: chloroplast fission	1.58E-02
149	GO:0019344: cysteine biosynthetic process	1.99E-02
150	GO:0000027: ribosomal large subunit assembly	1.99E-02
151	GO:0006810: transport	2.05E-02
152	GO:0006418: tRNA aminoacylation for protein translation	2.14E-02
153	GO:0009768: photosynthesis, light harvesting in photosystem I	2.14E-02
154	GO:0019915: lipid storage	2.29E-02
155	GO:0031408: oxylipin biosynthetic process	2.29E-02
156	GO:0016226: iron-sulfur cluster assembly	2.44E-02
157	GO:0006730: one-carbon metabolic process	2.44E-02
158	GO:0007005: mitochondrion organization	2.44E-02
159	GO:0009411: response to UV	2.60E-02
160	GO:0042742: defense response to bacterium	2.82E-02
161	GO:0016117: carotenoid biosynthetic process	2.92E-02
162	GO:0080022: primary root development	3.08E-02
163	GO:0008033: tRNA processing	3.08E-02
164	GO:0010087: phloem or xylem histogenesis	3.08E-02
165	GO:0055114: oxidation-reduction process	3.16E-02
166	GO:0009958: positive gravitropism	3.25E-02
167	GO:0048825: cotyledon development	3.60E-02
168	GO:0009851: auxin biosynthetic process	3.60E-02
169	GO:0002229: defense response to oomycetes	3.78E-02
170	GO:0000302: response to reactive oxygen species	3.78E-02
171	GO:0009058: biosynthetic process	3.78E-02
172	GO:0030163: protein catabolic process	4.14E-02
173	GO:0009567: double fertilization forming a zygote and endosperm	4.33E-02
174	GO:0006633: fatty acid biosynthetic process	4.49E-02
175	GO:0040008: regulation of growth	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0005048: signal sequence binding	0.00E+00
2	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
6	GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding	0.00E+00
7	GO:0008887: glycerate kinase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
10	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
11	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
12	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
13	GO:0019843: rRNA binding	1.78E-32
14	GO:0003735: structural constituent of ribosome	1.31E-19
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.51E-06
16	GO:0016987: sigma factor activity	8.50E-05
17	GO:0001053: plastid sigma factor activity	8.50E-05
18	GO:0051920: peroxiredoxin activity	2.57E-04
19	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.57E-04
20	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.73E-04
21	GO:0004828: serine-tRNA ligase activity	3.73E-04
22	GO:0080132: fatty acid alpha-hydroxylase activity	3.73E-04
23	GO:0004071: aspartate-ammonia ligase activity	3.73E-04
24	GO:0004853: uroporphyrinogen decarboxylase activity	3.73E-04
25	GO:0004832: valine-tRNA ligase activity	3.73E-04
26	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.73E-04
27	GO:0004033: aldo-keto reductase (NADP) activity	4.18E-04
28	GO:0016209: antioxidant activity	4.18E-04
29	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.11E-04
30	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	8.10E-04
31	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	8.10E-04
32	GO:0004412: homoserine dehydrogenase activity	8.10E-04
33	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	8.10E-04
34	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	8.10E-04
35	GO:0042389: omega-3 fatty acid desaturase activity	8.10E-04
36	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	8.10E-04
37	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	8.10E-04
38	GO:0009977: proton motive force dependent protein transmembrane transporter activity	8.10E-04
39	GO:0004617: phosphoglycerate dehydrogenase activity	8.10E-04
40	GO:0016597: amino acid binding	8.71E-04
41	GO:0016531: copper chaperone activity	1.31E-03
42	GO:0019829: cation-transporting ATPase activity	1.31E-03
43	GO:0004148: dihydrolipoyl dehydrogenase activity	1.31E-03
44	GO:0004751: ribose-5-phosphate isomerase activity	1.31E-03
45	GO:0070402: NADPH binding	1.31E-03
46	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.89E-03
47	GO:0004072: aspartate kinase activity	1.89E-03
48	GO:0035250: UDP-galactosyltransferase activity	1.89E-03
49	GO:0016149: translation release factor activity, codon specific	1.89E-03
50	GO:0016851: magnesium chelatase activity	1.89E-03
51	GO:0004550: nucleoside diphosphate kinase activity	1.89E-03
52	GO:0043023: ribosomal large subunit binding	1.89E-03
53	GO:0008097: 5S rRNA binding	1.89E-03
54	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.54E-03
55	GO:0043495: protein anchor	2.54E-03
56	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.54E-03
57	GO:0004659: prenyltransferase activity	2.54E-03
58	GO:0016279: protein-lysine N-methyltransferase activity	2.54E-03
59	GO:0003723: RNA binding	2.76E-03
60	GO:0008374: O-acyltransferase activity	3.25E-03
61	GO:0016846: carbon-sulfur lyase activity	3.25E-03
62	GO:0003959: NADPH dehydrogenase activity	3.25E-03
63	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.56E-03
64	GO:0080030: methyl indole-3-acetate esterase activity	4.02E-03
65	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.02E-03
66	GO:0004130: cytochrome-c peroxidase activity	4.02E-03
67	GO:0016208: AMP binding	4.02E-03
68	GO:0005247: voltage-gated chloride channel activity	4.02E-03
69	GO:0016788: hydrolase activity, acting on ester bonds	4.78E-03
70	GO:0004124: cysteine synthase activity	4.85E-03
71	GO:0019899: enzyme binding	5.73E-03
72	GO:0008312: 7S RNA binding	6.65E-03
73	GO:0016168: chlorophyll binding	7.34E-03
74	GO:0005375: copper ion transmembrane transporter activity	7.64E-03
75	GO:0003729: mRNA binding	7.73E-03
76	GO:0004252: serine-type endopeptidase activity	8.49E-03
77	GO:0008236: serine-type peptidase activity	8.62E-03
78	GO:0003747: translation release factor activity	8.66E-03
79	GO:0016844: strictosidine synthase activity	9.74E-03
80	GO:0004222: metalloendopeptidase activity	1.00E-02
81	GO:0004519: endonuclease activity	1.32E-02
82	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.45E-02
83	GO:0004089: carbonate dehydratase activity	1.45E-02
84	GO:0003774: motor activity	1.58E-02
85	GO:0008266: poly(U) RNA binding	1.58E-02
86	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.58E-02
87	GO:0051537: 2 iron, 2 sulfur cluster binding	1.61E-02
88	GO:0051287: NAD binding	1.81E-02
89	GO:0031409: pigment binding	1.85E-02
90	GO:0004601: peroxidase activity	1.95E-02
91	GO:0005528: FK506 binding	1.99E-02
92	GO:0051536: iron-sulfur cluster binding	1.99E-02
93	GO:0043424: protein histidine kinase binding	2.14E-02
94	GO:0005509: calcium ion binding	2.46E-02
95	GO:0022891: substrate-specific transmembrane transporter activity	2.60E-02
96	GO:0003727: single-stranded RNA binding	2.76E-02
97	GO:0004812: aminoacyl-tRNA ligase activity	2.92E-02
98	GO:0008080: N-acetyltransferase activity	3.25E-02
99	GO:0010181: FMN binding	3.42E-02
100	GO:0048038: quinone binding	3.78E-02
101	GO:0000156: phosphorelay response regulator activity	4.14E-02
102	GO:0016491: oxidoreductase activity	4.43E-02
103	GO:0008237: metallopeptidase activity	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
3	GO:0009507: chloroplast	2.45E-80
4	GO:0009570: chloroplast stroma	1.36E-50
5	GO:0009941: chloroplast envelope	2.69E-40
6	GO:0009535: chloroplast thylakoid membrane	6.77E-32
7	GO:0009543: chloroplast thylakoid lumen	1.03E-23
8	GO:0009579: thylakoid	6.63E-20
9	GO:0009534: chloroplast thylakoid	1.35E-18
10	GO:0005840: ribosome	2.27E-18
11	GO:0031977: thylakoid lumen	9.10E-14
12	GO:0009654: photosystem II oxygen evolving complex	2.58E-07
13	GO:0009536: plastid	1.24E-06
14	GO:0019898: extrinsic component of membrane	2.04E-06
15	GO:0000311: plastid large ribosomal subunit	2.08E-06
16	GO:0009533: chloroplast stromal thylakoid	9.05E-06
17	GO:0031969: chloroplast membrane	6.35E-05
18	GO:0009295: nucleoid	8.42E-05
19	GO:0030095: chloroplast photosystem II	1.07E-04
20	GO:0000312: plastid small ribosomal subunit	1.07E-04
21	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.73E-04
22	GO:0000428: DNA-directed RNA polymerase complex	3.73E-04
23	GO:0009547: plastid ribosome	3.73E-04
24	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.13E-04
25	GO:0042170: plastid membrane	8.10E-04
26	GO:0080085: signal recognition particle, chloroplast targeting	8.10E-04
27	GO:0009706: chloroplast inner membrane	1.04E-03
28	GO:0032040: small-subunit processome	1.11E-03
29	GO:0010007: magnesium chelatase complex	1.31E-03
30	GO:0033281: TAT protein transport complex	1.31E-03
31	GO:0009509: chromoplast	1.31E-03
32	GO:0015934: large ribosomal subunit	1.57E-03
33	GO:0042646: plastid nucleoid	1.89E-03
34	GO:0042651: thylakoid membrane	2.16E-03
35	GO:0015935: small ribosomal subunit	2.37E-03
36	GO:0034707: chloride channel complex	4.02E-03
37	GO:0009523: photosystem II	4.48E-03
38	GO:0016363: nuclear matrix	4.85E-03
39	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	7.64E-03
40	GO:0022626: cytosolic ribosome	7.79E-03
41	GO:0016020: membrane	8.63E-03
42	GO:0005763: mitochondrial small ribosomal subunit	8.66E-03
43	GO:0016459: myosin complex	1.09E-02
44	GO:0009508: plastid chromosome	1.45E-02
45	GO:0022627: cytosolic small ribosomal subunit	1.60E-02
46	GO:0030076: light-harvesting complex	1.71E-02
47	GO:0022625: cytosolic large ribosomal subunit	2.73E-02
48	GO:0010287: plastoglobule	3.40E-02
49	GO:0009522: photosystem I	3.42E-02
50	GO:0005759: mitochondrial matrix	4.49E-02
51	GO:0005778: peroxisomal membrane	4.52E-02
52	GO:0043231: intracellular membrane-bounded organelle	4.67E-02