co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
3	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
4	GO:0061635: regulation of protein complex stability	0.00E+00
5	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
6	GO:0006066: alcohol metabolic process	0.00E+00
7	GO:0042821: pyridoxal biosynthetic process	0.00E+00
8	GO:0016553: base conversion or substitution editing	0.00E+00
9	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
10	GO:0042820: vitamin B6 catabolic process	0.00E+00
11	GO:0010027: thylakoid membrane organization	1.40E-06
12	GO:0015979: photosynthesis	1.45E-06
13	GO:0032544: plastid translation	7.15E-06
14	GO:0015995: chlorophyll biosynthetic process	4.69E-05
15	GO:0045038: protein import into chloroplast thylakoid membrane	6.78E-05
16	GO:0006418: tRNA aminoacylation for protein translation	8.50E-05
17	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.80E-04
18	GO:0048564: photosystem I assembly	2.28E-04
19	GO:0006353: DNA-templated transcription, termination	2.28E-04
20	GO:1904964: positive regulation of phytol biosynthetic process	2.48E-04
21	GO:0042759: long-chain fatty acid biosynthetic process	2.48E-04
22	GO:0042371: vitamin K biosynthetic process	2.48E-04
23	GO:0090548: response to nitrate starvation	2.48E-04
24	GO:0006430: lysyl-tRNA aminoacylation	2.48E-04
25	GO:0071588: hydrogen peroxide mediated signaling pathway	2.48E-04
26	GO:0009443: pyridoxal 5'-phosphate salvage	2.48E-04
27	GO:0043489: RNA stabilization	2.48E-04
28	GO:1902025: nitrate import	2.48E-04
29	GO:1904966: positive regulation of vitamin E biosynthetic process	2.48E-04
30	GO:0071482: cellular response to light stimulus	2.82E-04
31	GO:0000373: Group II intron splicing	3.41E-04
32	GO:0009658: chloroplast organization	3.65E-04
33	GO:1900865: chloroplast RNA modification	4.05E-04
34	GO:0043085: positive regulation of catalytic activity	5.47E-04
35	GO:0006352: DNA-templated transcription, initiation	5.47E-04
36	GO:0006568: tryptophan metabolic process	5.49E-04
37	GO:0010270: photosystem II oxygen evolving complex assembly	5.49E-04
38	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.49E-04
39	GO:0034755: iron ion transmembrane transport	5.49E-04
40	GO:0018026: peptidyl-lysine monomethylation	5.49E-04
41	GO:0010207: photosystem II assembly	7.98E-04
42	GO:0051604: protein maturation	8.92E-04
43	GO:0030865: cortical cytoskeleton organization	8.92E-04
44	GO:0000913: preprophase band assembly	8.92E-04
45	GO:0010581: regulation of starch biosynthetic process	8.92E-04
46	GO:0090391: granum assembly	8.92E-04
47	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	8.92E-04
48	GO:0010025: wax biosynthetic process	9.89E-04
49	GO:0007010: cytoskeleton organization	1.09E-03
50	GO:0006457: protein folding	1.23E-03
51	GO:0006986: response to unfolded protein	1.27E-03
52	GO:2001141: regulation of RNA biosynthetic process	1.27E-03
53	GO:0051085: chaperone mediated protein folding requiring cofactor	1.27E-03
54	GO:0009152: purine ribonucleotide biosynthetic process	1.27E-03
55	GO:0046653: tetrahydrofolate metabolic process	1.27E-03
56	GO:0034059: response to anoxia	1.27E-03
57	GO:0010239: chloroplast mRNA processing	1.27E-03
58	GO:0010088: phloem development	1.27E-03
59	GO:0016556: mRNA modification	1.27E-03
60	GO:0015994: chlorophyll metabolic process	1.70E-03
61	GO:0042991: transcription factor import into nucleus	1.70E-03
62	GO:0071483: cellular response to blue light	1.70E-03
63	GO:0080110: sporopollenin biosynthetic process	2.17E-03
64	GO:0032543: mitochondrial translation	2.17E-03
65	GO:0006564: L-serine biosynthetic process	2.17E-03
66	GO:0048544: recognition of pollen	2.31E-03
67	GO:0006014: D-ribose metabolic process	2.67E-03
68	GO:0042549: photosystem II stabilization	2.67E-03
69	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.67E-03
70	GO:0000470: maturation of LSU-rRNA	2.67E-03
71	GO:0016554: cytidine to uridine editing	2.67E-03
72	GO:0006828: manganese ion transport	2.67E-03
73	GO:0042793: transcription from plastid promoter	2.67E-03
74	GO:0010190: cytochrome b6f complex assembly	2.67E-03
75	GO:0003006: developmental process involved in reproduction	2.67E-03
76	GO:0010019: chloroplast-nucleus signaling pathway	3.21E-03
77	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.21E-03
78	GO:1901259: chloroplast rRNA processing	3.21E-03
79	GO:0048280: vesicle fusion with Golgi apparatus	3.21E-03
80	GO:0045454: cell redox homeostasis	3.39E-03
81	GO:0009772: photosynthetic electron transport in photosystem II	3.79E-03
82	GO:0010196: nonphotochemical quenching	3.79E-03
83	GO:0006400: tRNA modification	3.79E-03
84	GO:0045292: mRNA cis splicing, via spliceosome	4.39E-03
85	GO:0009819: drought recovery	4.39E-03
86	GO:0042255: ribosome assembly	4.39E-03
87	GO:0006605: protein targeting	4.39E-03
88	GO:0018298: protein-chromophore linkage	4.97E-03
89	GO:0048481: plant ovule development	4.97E-03
90	GO:0019430: removal of superoxide radicals	5.03E-03
91	GO:0009657: plastid organization	5.03E-03
92	GO:0009451: RNA modification	5.36E-03
93	GO:0009631: cold acclimation	5.75E-03
94	GO:0009637: response to blue light	6.30E-03
95	GO:0006779: porphyrin-containing compound biosynthetic process	6.40E-03
96	GO:0042761: very long-chain fatty acid biosynthetic process	6.40E-03
97	GO:0010380: regulation of chlorophyll biosynthetic process	6.40E-03
98	GO:0034599: cellular response to oxidative stress	6.59E-03
99	GO:0006896: Golgi to vacuole transport	7.12E-03
100	GO:0006782: protoporphyrinogen IX biosynthetic process	7.12E-03
101	GO:0030001: metal ion transport	7.18E-03
102	GO:0006816: calcium ion transport	7.88E-03
103	GO:0009773: photosynthetic electron transport in photosystem I	7.88E-03
104	GO:0009073: aromatic amino acid family biosynthetic process	7.88E-03
105	GO:0006415: translational termination	7.88E-03
106	GO:0006879: cellular iron ion homeostasis	7.88E-03
107	GO:0010114: response to red light	8.13E-03
108	GO:0010628: positive regulation of gene expression	9.47E-03
109	GO:0009735: response to cytokinin	9.73E-03
110	GO:0010020: chloroplast fission	1.03E-02
111	GO:0006364: rRNA processing	1.10E-02
112	GO:0090351: seedling development	1.12E-02
113	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.25E-02
114	GO:0009768: photosynthesis, light harvesting in photosystem I	1.39E-02
115	GO:0016226: iron-sulfur cluster assembly	1.59E-02
116	GO:0040007: growth	1.69E-02
117	GO:0010584: pollen exine formation	1.79E-02
118	GO:0016117: carotenoid biosynthetic process	1.90E-02
119	GO:0042147: retrograde transport, endosome to Golgi	1.90E-02
120	GO:0008033: tRNA processing	2.01E-02
121	GO:0000413: protein peptidyl-prolyl isomerization	2.01E-02
122	GO:0010051: xylem and phloem pattern formation	2.01E-02
123	GO:0000226: microtubule cytoskeleton organization	2.01E-02
124	GO:0042335: cuticle development	2.01E-02
125	GO:0006397: mRNA processing	2.07E-02
126	GO:0009958: positive gravitropism	2.12E-02
127	GO:0006662: glycerol ether metabolic process	2.12E-02
128	GO:0008152: metabolic process	2.22E-02
129	GO:0007018: microtubule-based movement	2.23E-02
130	GO:0042744: hydrogen peroxide catabolic process	2.24E-02
131	GO:0019252: starch biosynthetic process	2.34E-02
132	GO:0006623: protein targeting to vacuole	2.34E-02
133	GO:0048825: cotyledon development	2.34E-02
134	GO:0080156: mitochondrial mRNA modification	2.46E-02
135	GO:0000302: response to reactive oxygen species	2.46E-02
136	GO:0006891: intra-Golgi vesicle-mediated transport	2.46E-02
137	GO:0032502: developmental process	2.58E-02
138	GO:0006508: proteolysis	2.63E-02
139	GO:0055114: oxidation-reduction process	2.82E-02
140	GO:0006412: translation	2.98E-02
141	GO:0008380: RNA splicing	3.24E-02
142	GO:0006888: ER to Golgi vesicle-mediated transport	3.59E-02
143	GO:0010311: lateral root formation	4.00E-02
144	GO:0009832: plant-type cell wall biogenesis	4.00E-02
145	GO:0010218: response to far red light	4.14E-02
146	GO:0009793: embryo development ending in seed dormancy	4.14E-02
147	GO:0042254: ribosome biogenesis	4.26E-02
148	GO:0007568: aging	4.28E-02
149	GO:0009853: photorespiration	4.56E-02
150	GO:0045087: innate immune response	4.56E-02
151	GO:0016051: carbohydrate biosynthetic process	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
7	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
8	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
9	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
10	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
11	GO:0004823: leucine-tRNA ligase activity	0.00E+00
12	GO:0019843: rRNA binding	1.82E-08
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.47E-07
14	GO:0002161: aminoacyl-tRNA editing activity	1.03E-05
15	GO:0001053: plastid sigma factor activity	4.26E-05
16	GO:0016987: sigma factor activity	4.26E-05
17	GO:0005528: FK506 binding	7.28E-05
18	GO:0051087: chaperone binding	8.50E-05
19	GO:0003723: RNA binding	1.21E-04
20	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.37E-04
21	GO:0051920: peroxiredoxin activity	1.37E-04
22	GO:0004812: aminoacyl-tRNA ligase activity	1.63E-04
23	GO:0016209: antioxidant activity	2.28E-04
24	GO:0004033: aldo-keto reductase (NADP) activity	2.28E-04
25	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	2.48E-04
26	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.48E-04
27	GO:0004824: lysine-tRNA ligase activity	2.48E-04
28	GO:0003867: 4-aminobutyrate transaminase activity	2.48E-04
29	GO:0008237: metallopeptidase activity	3.80E-04
30	GO:0008047: enzyme activator activity	4.74E-04
31	GO:0047746: chlorophyllase activity	5.49E-04
32	GO:0004617: phosphoglycerate dehydrogenase activity	5.49E-04
33	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.49E-04
34	GO:0000774: adenyl-nucleotide exchange factor activity	5.49E-04
35	GO:0016630: protochlorophyllide reductase activity	5.49E-04
36	GO:0008266: poly(U) RNA binding	7.98E-04
37	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	8.92E-04
38	GO:0070402: NADPH binding	8.92E-04
39	GO:0008864: formyltetrahydrofolate deformylase activity	8.92E-04
40	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	8.92E-04
41	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	8.92E-04
42	GO:0004519: endonuclease activity	1.23E-03
43	GO:0043621: protein self-association	1.26E-03
44	GO:0016149: translation release factor activity, codon specific	1.27E-03
45	GO:0016851: magnesium chelatase activity	1.27E-03
46	GO:0004176: ATP-dependent peptidase activity	1.32E-03
47	GO:0016279: protein-lysine N-methyltransferase activity	1.70E-03
48	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.70E-03
49	GO:0004045: aminoacyl-tRNA hydrolase activity	1.70E-03
50	GO:1990137: plant seed peroxidase activity	1.70E-03
51	GO:0043495: protein anchor	1.70E-03
52	GO:0042277: peptide binding	1.70E-03
53	GO:0003959: NADPH dehydrogenase activity	2.17E-03
54	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.17E-03
55	GO:0004791: thioredoxin-disulfide reductase activity	2.31E-03
56	GO:0005509: calcium ion binding	2.56E-03
57	GO:0004130: cytochrome-c peroxidase activity	2.67E-03
58	GO:0016688: L-ascorbate peroxidase activity	2.67E-03
59	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.01E-03
60	GO:0004747: ribokinase activity	3.21E-03
61	GO:0102425: myricetin 3-O-glucosyltransferase activity	3.79E-03
62	GO:0102360: daphnetin 3-O-glucosyltransferase activity	3.79E-03
63	GO:0019899: enzyme binding	3.79E-03
64	GO:0016168: chlorophyll binding	4.03E-03
65	GO:0008312: 7S RNA binding	4.39E-03
66	GO:0047893: flavonol 3-O-glucosyltransferase activity	4.39E-03
67	GO:0008865: fructokinase activity	4.39E-03
68	GO:0043022: ribosome binding	4.39E-03
69	GO:0008236: serine-type peptidase activity	4.72E-03
70	GO:0004222: metalloendopeptidase activity	5.48E-03
71	GO:0008017: microtubule binding	5.52E-03
72	GO:0003747: translation release factor activity	5.70E-03
73	GO:0047617: acyl-CoA hydrolase activity	6.40E-03
74	GO:0005381: iron ion transmembrane transporter activity	6.40E-03
75	GO:0005384: manganese ion transmembrane transporter activity	6.40E-03
76	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	7.12E-03
77	GO:0000049: tRNA binding	8.66E-03
78	GO:0004601: peroxidase activity	9.09E-03
79	GO:0016788: hydrolase activity, acting on ester bonds	9.31E-03
80	GO:0015095: magnesium ion transmembrane transporter activity	9.47E-03
81	GO:0004565: beta-galactosidase activity	9.47E-03
82	GO:0008081: phosphoric diester hydrolase activity	9.47E-03
83	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.10E-02
84	GO:0003735: structural constituent of ribosome	1.15E-02
85	GO:0031409: pigment binding	1.21E-02
86	GO:0051536: iron-sulfur cluster binding	1.30E-02
87	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.34E-02
88	GO:0046872: metal ion binding	1.35E-02
89	GO:0008324: cation transmembrane transporter activity	1.39E-02
90	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.43E-02
91	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.43E-02
92	GO:0051082: unfolded protein binding	1.57E-02
93	GO:0042803: protein homodimerization activity	1.59E-02
94	GO:0022891: substrate-specific transmembrane transporter activity	1.69E-02
95	GO:0030246: carbohydrate binding	1.74E-02
96	GO:0003727: single-stranded RNA binding	1.79E-02
97	GO:0047134: protein-disulfide reductase activity	1.90E-02
98	GO:0008080: N-acetyltransferase activity	2.12E-02
99	GO:0009055: electron carrier activity	2.14E-02
100	GO:0050662: coenzyme binding	2.23E-02
101	GO:0008194: UDP-glycosyltransferase activity	3.03E-02
102	GO:0016597: amino acid binding	3.07E-02
103	GO:0016887: ATPase activity	3.39E-02
104	GO:0042802: identical protein binding	3.44E-02
105	GO:0005096: GTPase activator activity	4.00E-02
106	GO:0008168: methyltransferase activity	4.03E-02
107	GO:0016491: oxidoreductase activity	4.74E-02
108	GO:0000149: SNARE binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.49E-55
2	GO:0009570: chloroplast stroma	3.96E-25
3	GO:0009535: chloroplast thylakoid membrane	7.21E-19
4	GO:0009941: chloroplast envelope	2.82E-16
5	GO:0009543: chloroplast thylakoid lumen	6.38E-16
6	GO:0031977: thylakoid lumen	1.71E-13
7	GO:0009579: thylakoid	2.41E-12
8	GO:0009534: chloroplast thylakoid	3.90E-11
9	GO:0009654: photosystem II oxygen evolving complex	8.50E-05
10	GO:0019898: extrinsic component of membrane	2.47E-04
11	GO:0009547: plastid ribosome	2.48E-04
12	GO:0009515: granal stacked thylakoid	2.48E-04
13	GO:0043231: intracellular membrane-bounded organelle	2.79E-04
14	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.82E-04
15	GO:0030529: intracellular ribonucleoprotein complex	4.41E-04
16	GO:0031969: chloroplast membrane	5.39E-04
17	GO:0080085: signal recognition particle, chloroplast targeting	5.49E-04
18	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.49E-04
19	GO:0030981: cortical microtubule cytoskeleton	5.49E-04
20	GO:0010007: magnesium chelatase complex	8.92E-04
21	GO:0005840: ribosome	9.62E-04
22	GO:0042651: thylakoid membrane	1.20E-03
23	GO:0009536: plastid	1.35E-03
24	GO:0009526: plastid envelope	1.70E-03
25	GO:0055035: plastid thylakoid membrane	2.17E-03
26	GO:0000793: condensed chromosome	2.67E-03
27	GO:0010005: cortical microtubule, transverse to long axis	3.21E-03
28	GO:0000794: condensed nuclear chromosome	3.79E-03
29	GO:0009533: chloroplast stromal thylakoid	3.79E-03
30	GO:0012507: ER to Golgi transport vesicle membrane	4.39E-03
31	GO:0005759: mitochondrial matrix	4.62E-03
32	GO:0005811: lipid particle	5.03E-03
33	GO:0046658: anchored component of plasma membrane	7.45E-03
34	GO:0000311: plastid large ribosomal subunit	8.66E-03
35	GO:0009508: plastid chromosome	9.47E-03
36	GO:0000312: plastid small ribosomal subunit	1.03E-02
37	GO:0030095: chloroplast photosystem II	1.03E-02
38	GO:0030076: light-harvesting complex	1.12E-02
39	GO:0010287: plastoglobule	1.86E-02
40	GO:0005871: kinesin complex	1.90E-02
41	GO:0009522: photosystem I	2.23E-02
42	GO:0009523: photosystem II	2.34E-02
43	GO:0010319: stromule	2.94E-02
44	GO:0009295: nucleoid	2.94E-02
45	GO:0015934: large ribosomal subunit	4.28E-02
46	GO:0005819: spindle	4.86E-02
47	GO:0005874: microtubule	5.00E-02