Gene: AT2G36990
     

Gene description


TAIR ID: AT2G36990

Short description: RNApolymerase sigma-subunit F

Pathogen responsiveness: 0.48

General responsiveness: 1.81

Orthologous


Rice:

OS08G0242800   OS11G0448400  

Maize:

GRMZM2G144196  

Wheat: No orthologous gene

GO biological process


cellular response to light stimulus, positive regulation of transcription, DNA-templated, seedling development, regulation of transcription, DNA-templated transcription, initiation, cellular response to blue light


GO cellular component


plastid, nucleus, chloroplast


GO molecular function


sigma factor activity, DNA-directed 5'-3' RNA polymerase activity, plastid sigma factor activity, DNA binding, protein binding, transcription factor activity, sequence-specific DNA binding


Protein domain


PfamPF04542, Sigma-70 region 2
PfamPF04539, Sigma-70 region 3
PfamPF04545, Sigma-70, region 4

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT2G22300

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 6

click to view PPI network

Differentially expressed condition


27 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, WT, controlCol, WT, Bg h-1.616.69E-07
GSE12856Col, ataf1, controlCol, ataf1, Bg h-1.742.37E-07
GSE17464Laer, JA+Flg22 0 hLaer, JA+Flg22 1 h-1.742.03E-02
GSE17464Laer, JA+Flg22 0 hLaer, JA+Flg22 2 h-2.566.89E-04
GSE17464Laer, controlLaer, Flg22 2 h-2.611.19E-04
GSE17464Penta, controlPenta, Flg22 2 h-2.061.98E-03
GSE17464Penta, controlPenta, Flg22 2 h-3.128.72E-06
GSE17500Col, 35S:AFB1, control 0 hCol, 35S:AFB1, PstDC3000 24 h-2.164.38E-05
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h-2.033.60E-05
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h-2.143.65E-05
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-4.531.14E-09
GSE21920Col, WT, mockCol, WT, Pto HopZ1a 6 h-2.245.07E-08
GSE40544Col, WT, controlCol, WT, PstDC3000 EV-1.617.51E-06
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-3.404.17E-13
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h-1.692.50E-08
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-2.583.08E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-2.163.36E-10
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-2.057.81E-10
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-3.276.75E-13
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.533.73E-08
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-2.929.71E-13
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-2.358.44E-06
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-3.084.21E-09
GSE5615Col, WT, water 4 hCol, WT, HrpZ 4 h-1.531.96E-09
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-2.242.12E-03
GSE6176Col, WT, control 12 hCol, WT, PstDC3000 12 h-2.256.08E-07
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h-1.667.88E-03






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